Gene detail

Gene detail information of Glyur000067s00006368

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17610.1	0	tRNA/rRNA methyltransferase (SpoU) family protein
NR	KEH31617.1	0	tRNA/rRNA methyltransferase SpoU family protein [Medicago truncatula]
COG	YP_007109858.1	5.00E-22	tRNA guanosine-2'-O-methyltransferase [Geitlerinema sp. PCC 7407]
trEMBL	tr\|A0A072UPJ3\|A0A072UPJ3_MEDTR	0	tRNA/rRNA methyltransferase SpoU family protein {ECO:0000313\|EMBL:KEH31617.1}

Sequence

Transcript Sequence

>Glyur000067s00006368.1
GAACGTTACGTTGGCCAATCCAGTCACGTGCTTGAGGGTTTAGCAACCGAAAATTAGGGTTTTAGCTACTGAGGTGAGGTTTGAACTTTGAAGTGAGTAGCGGCATTTGAGATTTGAGAAAAATACAAACAATGTCCGAAGCAGAAGCAGAAGCAGAAGCAGGTTCCATGGCGTCACTAGTTGCTTTGCTGTCGAAAAGCTTCAATCAAGTGCCTCCCTCGGCCATTCCGCCAATGCTGGATTGCATTCTGCTGTCCACTGGTTTGTCTCCTCCCTCGCTCTTCGCTTCACTTCTCCATGACTTCCCTCGTTTTCTCAAGGATATTACTAAGGAGGATGATAATATGGATTCTGATAAACGTCTCCGTCTTGTGTCGCTGGTCGGCGCGTTTTGTCACCTTTTGAAGAAAACAGGGGCTGATTGTGACGCGGTACAATTGTTTGTGTGGAGGTGTTTTCTTCCTTTAGCTAAGGTGCTACAACCATCTCAGCTTGACTTGCTTAATCAGATAACAGAATCATTCATGGGTGTTGTGATTGAAACCAGCACCTGGGGAGTTCTTGAAGCAACTTTGGTGCCAATTCTTTTAAGATCAGTTGGTCTTTCAATGGGGATGCTTCATAATGATGATTTGGATTTCTATGAATGGAGTAGCGAATCATCTCCCCAGGGTTTGCATGACCTAATGGACAGGGAACAATTGCTGTCTTCCTCAAATTGTTTCAAATTGCCAATATCATGCAATGTTTTATCTGTAATTCTGGACGCTGCCCTTCAGTTTCTGCAAACAGATACAGTATCTAAATCAACAGGAAGAAAAGGGTGTATTGCAGATAAATTTGTTAAAATTTTGATTTGGGAATTATGCAATATGACTGAACGGATGCTTTTACATAGTCCAGAGCACAGGTCTTGTGCAGTTGGCTTTCTCCTTCCGATTATTCTCAAAGCATTCCCNGCCATTTGCTCATTTGAAATCTTAATTCGTGGCAAGAAACATGGCTTTTCTCGGGCATATTTCTTCATCAAAATGTGGAGCTGCTGCAAAACACTATTTTCAATTGGACCTTTAGAGAGAAGAGAGGGATATAATATACTTTCTTTGTATTTCTCTTTTTCCTGGTTGACAGAAGAATATGAAGATGCCGATAGTGATACAGTCGTTAAAGCTGAAGGATTTGACATAAGAGCAGAAAAAGAGTTCTGGGATGAAATAAAGATGGGGCTGGTTGACAAAGAGAGTTTAGTGAGGAAGCAGAGTTTATATATATTGAAGATGGCNCTGAATATACAAGAAGGAACCAATACCCTCTCTAGCATGTCAAAAAGGAATACCAATACCAATGGAAAACATTCAGTACCTCATGGTGTGTCAAAAAGGGAACTATGGGCTAACAAAGAAGCCAAGTCACTTGGTGTTGGGCAGCTTTCTACGTCAGGTGACCTGATTTTTAACAGCCAGCAGTATTGGGATGCATTTGTGCTTTTATATGAGATGCTTGAAGAATATGGTACTCATTTAGTGTCCTTGATGCTTCAGTTCTCTGGGTCATATCACAATGTTGGAACCAGTATCAGTAAAGTTCATCAAGATCAATTTGAAATATATGGCGAGATTCTTGATTGGTTATCTATTTTATGGGAACGAGGCCTTCATCATGACAACCCTCAAGTAAGGTGCCTGATCATGCAGTCTTTTCTTGACATCAATTTGGAGAATTGTGGGAACTGCATAAAATCAGTGCCCGAAACCTTTGTTCTTGGTCCATTTTTGCATGGGCTGAATGATCCAATTCACCACAAAGAATTTGGTGTAAAAGGAGTCTATATGTCAAGCGTGATTAAAGGTGCAGCCCAGTTTCTACAGCATTATGTTAGTTTTCTAGCTCCAAGGAAGCGCTTTGCATTTTTATGCAATTTAGCATCTACTGCTAAACATCAATCTTTTGGACGAGCTGGACTTATGGGCCTTGCTGAATGCATTGCTTCGGCTGCTACTGGCATTGGAATACTTATTCATNCAAGGATAGAATCATCCCTGGGCACCTTTCCAGTGGAATTTGTTACTGGAATGGAGAATCAAGCTGATAAAAAAGAATTACTGGATATCTTTAGATATGTAGTTGAGAGCAGCAAACAACATTTCAACCCCAGCTATCGACTTCAAGTTTGTGGCAGAATTCTGGAGGCTGCTGCTTCTGTGGTGTGCACATTTGATATTCCTCTTGAAACTCTTTTGCTTTTTATTTCAGCATTGCCACGGGAATTTACGGATTATGGTGGCCAATTAAGGTTGACCATGCAAAGATGGCTTTCTGGTTGTGGTTACAAGGATTGCTGTGCCAATTGCTGTATTAATGAGATGAAGCTCTGGCAGAGTCTTCATGACTTCCCACAGAGCTTTGTCAGTAATCACCTTTCTGTTGATATTTCTCTTAATTATGATGATGACGACTTGAGTGCATGGGAGTTGGAAGCAAATAGATGGGCAAGAGTGCTTTTCCTTGCAATCAAGGAGGAATATCATCTGGAACCCATTTTAATGTTCATTCAAAAGATCGGCTCTAATATCTTCAAACAAAACCATGGTACAATATATGTAGCAGTGAAATTCTTGATTCTTGCCTCGAGCTTGGTTCTGGAGCTTCGCAGAACAAAGGAAAGAGTAATTGAACATGGTAATAAAGCCAGATCAAATACAGGGAGTGCCTTTCCTGGTGTAGTTGATGATCGGAGTTTCATAGATGACATTTCTGAGGAGCTTGTGGATAAATTTCTTTTTTTGTTGGATGATCTAGTTCAGTTTGCAAACCAGTCTTGTTCCGTTTTCTGGTATGGTGTTGTTGCAGAGGCCAGTACACTTCCTGGTGCGGTAAAAGGAAAACTTGGAGGTCCTAGTCAGCGAAGGTTGCCAATTTCTGCCACCACTGCTGTATTGCAAGCGATGATGTCAGTGAAGGCAATATCATCAATCTTGTCGTGGTGTAAACAAACTAAAAGTGATGCTTTGCTTAACTCTGCTTTTACTTTCATGTGGCAATTCTTCTGGAGGACTACTAGATCTCCACCTTCTTGCTCAGAGACACAAGCAGAAGTCTGTCTTGCAGCATATGAAGCGTTANCCACTGTTCTCAGAGTTCTAGCTTCCACATACTGTACTCAATCTTTTTATCTCATTGAGGAAAATGAGCAATTGTTTTCTGAGATAGAAGGCAGGCCTCAGTTAGATTATATGTGTGTATCTTTCATTCAAAATGTCAATGATCTTTTAGGGGCAGGAATTTTGGCAAGGACTCGAAGGGCTGTTTTGTTAGATATAAAGTGGGTGTGTCTAGAATCTTTGCTGTCAATTCCTTCTTATGCTCTCAAGAATGGGTTTCATTTCGAGGGAAACCACACTTTCTTCTCAGATGGCACTCTCAGATGCATTTTTGGTGATCTTGTTGAGAGCCTTGAAAATGCTGGAGAAAGTACTGTTTTGCCCATGCTGAGGTCACTCAGAATGTTATTTGATCTAGTTGCCAAAGTGACGTCAAGTGCAGTTGTTTCCTGCAGTCATATGATGTGGAATTTGGTCCATTCATCTTGGATATTGCATATAAATTGCAATAAGCGCAGAGTTGCTTCTATTGCTGCTCTTTTGTCATCTGTTTTGCATCCTTTGTTATTCAATGATGAGAGCATGCATCAATCAGACAATGCACCTGGACCACTTAAATGGTTTATTGAAAATCTTCTTGAGGAAGGCACAAAGAGCCCTCGCACAATTCGTCTTGCAGCATTGCACTTAACAGGGTTATGGCTCTCAAATCCTAGGATTATAAAGTTTTATCTGAAGGAGCTTAAATTGTTATCTCTCTATGGTTCAGTTGCATTTGANGAGGATTTCGAAGCTGAGCTAGCTGACAATAATGATGCAAGACTGGAGGTCTGTTTATTGGCCAGAAGCCCTGATCCTGAGCTGACTGAAGCATTTATTAATACAGAGTTGTATGCACGTGTATCAGTTGCTGTTCTGTTTTACAAATTGGCAGACCTGGCTAGTATGGTGGGATCACCAGATGAAGATGCAGTTTGCATTGCGGCACTACAATCTGGCAGATCATTTCTGCTAGAGCTTCTTGACTCCGCGGTGAATGATAAAGATCTTGCTAAGGAGTTATACAAAAAATATAGTTCTATTCATAGGCGCAAAATACGTGCTTGGCAAATAATATGTGTCTTGTCACCATTTGTCGAGGATGATATAGTTGGGAAAAGAAATAACTTACCTGCTGTTCGTCAATATTTAGAGACATTTGCAATCAACATATACTTGAAGTTTCCATCACTTGTTAAAGAACAATTGGTCCCTATATTGCGGGATTATGACATGAAACAGCAGGCACTATCTTCATATGTATTCATTGCAGCTAACGTCATTCTCAATTCATCTAAAGATGTTCAATCTAAGCATTTGGATGAATTGTTTCCTCCTCTAGTTCCATTGTTAACATCACATCATCACAGCTTACGTGGCTTTACCCAGTTACTAGTATATCAAATTCTGCATAAACTGTTTCCACTGTTGAATTCTGGATCTTCTGAGATACTACCTTTAGAGAAGAGGTGCTTTGTAGATTTGAAAACATACCTTGCAAGGAATTCTGATTGTGCACGCTTACGAGCATCAATGGAAGGATATCTAGATGCATATAACCCAAATAGCTCGGTCACACCTGCTGGAATATTCATCAATCGAGTTGAGGAGGATGATTTTGAATGTGTTCCAACGTCTCTTATGGAGCATGTTCTCAAATTTTTAAATGATGCTAGAGAAGACCTACGATGTTCAATGGCAAAGGACATGGTAACTATCAGGAATGAGACTCTAAAATTCAATGGAGATAATATCATGGAAAATTTATCCNGTGGCACTGAAGCTACCTTGGTTAAAGATATTTCTTCAGATTTCCAGAAAAAGCTTACTTTTACCAAACATGACAAGGGGGACAAAGAAGCAGGTTTCCTTTATGGCAATGATGAAACCTACAGAAAAATGGCTGAGATTGAAAGGGATGATCTCCTTCTGGACCAATTATTGCAGTCAAGAAGATCATCTCTAGATCAACAAAAGGCAAGTCGGCAGAATTTTATCCTTGTAGCATCACTTCTTGACCGCATCCCCAATCTTGCTGGTTTGGCACGTACATGTGAGGTGTTTAGAGCATCAGGACTGGCCATTGCCGATACAAACATCATGAGTGACAAACAGTTCCAACTAATCAGTGTGACAGCTGAAAAGTGGGTTCCTATAATAGAAGTCCCGGTAGATAGCATAAAGGCATACTTAAAGAAGAAAAAGAGAGAAGGATTTTCCATCTTGGGTTTGGAACAAACTGCAAACAGTGTACCCCTTGATCAGTATGTCTTTCCAAAAAAAATGGTCCTGGTTCTGGGCCGAGAGAAAGAAGGTATACCCGTGGATATAATTCATATTTTGGATGCTTGCATCGAAATTCCCCAGCTTGGGGTTGTTAGATCTCTGAACGTACATGTCAGTNGCGCTATTGCTCTCTGGGAGTATACTCGACAACAGAGATCTAAATAGCCTATGACCGTGAGATTAATTGTACAAGCCATTCAATTGCATTATAATACATGTAAAATTTTTGTTGTATTCTAGACTAGACTAGGGATTAGGACTAATGAGATTGCGTTGACAAACTCATGATGGCTATAGTTATGTATGTTCTTTTCATTTGCAGAGAGAGGGTATCTCCTTACCAACTCTTGGT

Protein Sequence

>Glyur000067s00006368.1
MSEAEAEAEAGSMASLVALLSKSFNQVPPSAIPPMLDCILLSTGLSPPSLFASLLHDFPRFLKDITKEDDNMDSDKRLRLVSLVGAFCHLLKKTGADCDAVQLFVWRCFLPLAKVLQPSQLDLLNQITESFMGVVIETSTWGVLEATLVPILLRSVGLSMGMLHNDDLDFYEWSSESSPQGLHDLMDREQLLSSSNCFKLPISCNVLSVILDAALQFLQTDTVSKSTGRKGCIADKFVKILIWELCNMTERMLLHSPEHRSCAVGFLLPIILKAFPAICSFEILIRGKKHGFSRAYFFIKMWSCCKTLFSIGPLERREGYNILSLYFSFSWLTEEYEDADSDTVVKAEGFDIRAEKEFWDEIKMGLVDKESLVRKQSLYILKMALNIQEGTNTLSSMSKRNTNTNGKHSVPHGVSKRELWANKEAKSLGVGQLSTSGDLIFNSQQYWDAFVLLYEMLEEYGTHLVSLMLQFSGSYHNVGTSISKVHQDQFEIYGEILDWLSILWERGLHHDNPQVRCLIMQSFLDINLENCGNCIKSVPETFVLGPFLHGLNDPIHHKEFGVKGVYMSSVIKGAAQFLQHYVSFLAPRKRFAFLCNLASTAKHQSFGRAGLMGLAECIASAATGIGILIHXRIESSLGTFPVEFVTGMENQADKKELLDIFRYVVESSKQHFNPSYRLQVCGRILEAAASVVCTFDIPLETLLLFISALPREFTDYGGQLRLTMQRWLSGCGYKDCCANCCINEMKLWQSLHDFPQSFVSNHLSVDISLNYDDDDLSAWELEANRWARVLFLAIKEEYHLEPILMFIQKIGSNIFKQNHGTIYVAVKFLILASSLVLELRRTKERVIEHGNKARSNTGSAFPGVVDDRSFIDDISEELVDKFLFLLDDLVQFANQSCSVFWYGVVAEASTLPGAVKGKLGGPSQRRLPISATTAVLQAMMSVKAISSILSWCKQTKSDALLNSAFTFMWQFFWRTTRSPPSCSETQAEVCLAAYEALXTVLRVLASTYCTQSFYLIEENEQLFSEIEGRPQLDYMCVSFIQNVNDLLGAGILARTRRAVLLDIKWVCLESLLSIPSYALKNGFHFEGNHTFFSDGTLRCIFGDLVESLENAGESTVLPMLRSLRMLFDLVAKVTSSAVVSCSHMMWNLVHSSWILHINCNKRRVASIAALLSSVLHPLLFNDESMHQSDNAPGPLKWFIENLLEEGTKSPRTIRLAALHLTGLWLSNPRIIKFYLKELKLLSLYGSVAFXEDFEAELADNNDARLEVCLLARSPDPELTEAFINTELYARVSVAVLFYKLADLASMVGSPDEDAVCIAALQSGRSFLLELLDSAVNDKDLAKELYKKYSSIHRRKIRAWQIICVLSPFVEDDIVGKRNNLPAVRQYLETFAINIYLKFPSLVKEQLVPILRDYDMKQQALSSYVFIAANVILNSSKDVQSKHLDELFPPLVPLLTSHHHSLRGFTQLLVYQILHKLFPLLNSGSSEILPLEKRCFVDLKTYLARNSDCARLRASMEGYLDAYNPNSSVTPAGIFINRVEEDDFECVPTSLMEHVLKFLNDAREDLRCSMAKDMVTIRNETLKFNGDNIMENLSXGTEATLVKDISSDFQKKLTFTKHDKGDKEAGFLYGNDETYRKMAEIERDDLLLDQLLQSRRSSLDQQKASRQNFILVASLLDRIPNLAGLARTCEVFRASGLAIADTNIMSDKQFQLISVTAEKWVPIIEVPVDSIKAYLKKKKREGFSILGLEQTANSVPLDQYVFPKKMVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSXAIALWEYTRQQRSK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	169680	191160	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0005488 binding

GO:0008173 RNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006368.1	PF00588.14	SpoU_methylase	1668	1810	2.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.898
SRR1783600	control	1.932
SRR1783602	moderate drought stress	3.744
SRR1811619	moderate drought stress	3.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.661
DRR006520	Root Summer glycyrrhizin high producing strain	2.709
DRR006521	Root Winter glycyrrhizin high producing strain	2.129
DRR006522	Root Winter glycyrrhizin high producing strain	2.156
DRR006523	Root Summer glycyrrhizin low producing strain	2.325
DRR006524	Root Summer glycyrrhizin low producing strain	2.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.723
SRR2868004	Drought Stress (root)	3.213
SRR2967015	Control (root)	3.409

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.861
SRR9715740	Leaf	1.398
SRR9715741	Leaf	0.876
SRR9715739	Root	0.294
SRR9715742	Root	3.283
SRR9715743	Root	2.566

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.447
SRR8749028	MeJA induced 9h	3.813
SRR8749029	MeJA induced 9h	2.401
SRR8749030	Uninduced	0.237
SRR8749031	Uninduced	0.218
SRR8749032	Uninduced	0.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.946
SRR8400027	Control - Root	4.941