Gene detail

Gene detail information of Glyur000067s00006363

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17030.1	7.00E-70	expansin-like B1
NR	AFK45939.1	2.50E-143	unknown [Medicago truncatula]
Swissprot	tr\|O23547\|EXLB1_ARATH	2.00E-83	Expansin-like B1 (Precursor)
trEMBL	tr\|I3T097\|I3T097_MEDTR	9.00E-144	Uncharacterized protein {ECO:0000313\|EMBL:AFK45939.1}

Sequence

Transcript Sequence

>Glyur000067s00006363.1
ATGCCATCCCTGGAACATAATCCTATTTTGCACCAAATTGGCCTTGTGTGTGCCATAATTCTCTTACCGGCACTGTGTAGCTGCAATGAATATTACACTAAATCCAGAGCATCCTTTTATGGCACCTCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGGGACTATGGAAGGACCGTTAATGATGGCAGTGTGGCAGCAGTGTCTGCTAAGCTATGGAAGAATGGAGCAGGCTGTGGTGCATGCTATCAGGTTAGGTGCAAATTATCACAATACTGTGATGACAATGGAGCATTGGTGGTGGTAACAGACCATGGTGAGGGGGACAGAACAGACTTCATTATGAGCCCACGTGCCTTCTCAAAATTGGGACGTGACAAAGATGCATCTGAAAAGCTGAAGAAATACGGAGTAGTGGATGTTGAATACAAAAGGGTGTCATGTACATTCAAGGGCAATAACATAGTGTTTAAGATCGATGAAAGCAGCAGCAACCCTGGCTACTTTGCTATTGTGATTCTCTATGTAGGTGGAACATACGAGGTTAACGCTGTTGAGATGTGGCAGAAGGAGCACCACAAATGGGAGGCCTTGCGTAGGTCCTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAAAGGTGAAATCCGATTGAGGTTCCAAGTGAGTAGCAGTTCTGGGCTTAAATGGGTTGAGTCCAGTTCTGCAATCCCTGCAAATTGGAAGGCTGGACACCAACTTGGCCTTGTTTGTGTCATANTGCTCTTACCCGCACTGTGTAACTGCAAGGAATATTATGGTACTAAATCCAGAGCATCCTATTATGGCACCCCTGATGGCTATGGGAATCCAAGGGAAGCTTGTGGCTTTGGGGACTATGGAAGGACGGTGAATGATGGGAAAGTCGCAGACGTGTCTGCTAGGCTATGGAGGAATGGAGGTGGCTGTGGTGCATGCTATCAGGTTAGGTGCTTAATACCACGATTGTGCGATAGAAATGGAGCAATGGTGGTGGTAACAGGGTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGTGGNTTCTCAAGTTTGGGACGTAACAAAAATGCTTCTGAAGAGCTGAAGAAATATGGTGTAGTGGATGTTGTATACGAGAGGGTCCCCTGCACATTCAAGGGCTATAACATAGTGTTTCAGGTCCAAGAAAGCAGCAAAAACCCTGGCTACTTTGCTATTGTGGTTCTCTATGCAGGTGGAACATATGATGTCACTGCTGTTGAAATGTGGAAGAGAGATCAACACCAATGGGAGACTCTGCGCAGGGCTTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAGAGGTCCCATCCCATTGAGATTCCAATTGAATTCAAGGTGGTCCAAGATCACTGTCCCTGGTAATTGGAAGGCCGGAGCTACTTATACCACCAAGATTCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	137327	147454	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005576 extracellular region

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006363.1	PF03330.13	DPBB_1	68	145	9.60E-15
Glyur000067s00006363.1	PF01357.16	Pollen_allerg_1	157	240	5.70E-12
Glyur000067s00006363.1	PF03330.13	DPBB_1	305	382	3.30E-09
Glyur000067s00006363.1	PF01357.16	Pollen_allerg_1	394	463	3.70E-10
Glyur000067s00006363.2	PF03330.13	DPBB_1	63	140	2.10E-13
Glyur000067s00006363.2	PF01357.16	Pollen_allerg_1	152	235	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.756
SRR1783600	control	0.855
SRR1783602	moderate drought stress	0.610
SRR1811619	moderate drought stress	0.611

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.385
DRR006520	Root Summer glycyrrhizin high producing strain	3.166
DRR006521	Root Winter glycyrrhizin high producing strain	778.945
DRR006522	Root Winter glycyrrhizin high producing strain	754.722
DRR006523	Root Summer glycyrrhizin low producing strain	1.892
DRR006524	Root Summer glycyrrhizin low producing strain	1.884
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.506
SRR2868004	Drought Stress (root)	252.851
SRR2967015	Control (root)	37.374

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.697
SRR9715740	Leaf	0.573
SRR9715741	Leaf	2.542
SRR9715739	Root	1.568
SRR9715742	Root	4.416
SRR9715743	Root	3.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	844.719
SRR8749028	MeJA induced 9h	2477.166
SRR8749029	MeJA induced 9h	1007.502
SRR8749030	Uninduced	18531.035
SRR8749031	Uninduced	20173.186
SRR8749032	Uninduced	15593.692

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	102.260
SRR8400027	Control - Root	72.192