Gene detail

Gene detail information of Glyur000067s00006360

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17570.3	5.00E-119	GATA transcription factor 26
NR	XP_004508957.1	0	PREDICTED: GATA transcription factor 26-like [Cicer arietinum]
Swissprot	tr\|Q8W4H1\|GAT26_ARATH	1.00E-145	GATA transcription factor 26
trEMBL	tr\|I1K0V3\|I1K0V3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G05320.1}

Sequence

Transcript Sequence

>Glyur000067s00006360.1
GAAAAATAAAAAATAAAGAAAAAGCTGAACATTTACTTCTTGTACAATACAACTAAGAGGTCACATACACACACATACACACAGAGACCTTCCTCTCTCATTCTCTCTCTTTCCATTGCACCTTCCCTTCTCCTTTTCTCTGTCATTTATGAGATTCCTCCAATGGTCTTTTCTCTTCCATTGGATTGTACAGATTCCCAGCTAGAATACCCAGATATCAATCTCTGTAATTCTATTTGATTTGTGGCTCTTTATGTGAAAAAAAAAACTTTTTAAGGACTGTAAAACTGAAACTTCTTCTGGGTCTATTGGCTTCTGTTTTTTTTTTTGCAAACTATCTTCTGGGTTTGCTGCAGAATAAAGCCCTCAATACCCACTACTATACGCCGCAAATAAGGTTTTTTAAAACAACTTTTATATTTTCCGGAAATTTCCATTTTTTTTGAACTTTTTTTTTATTTTTGTCAATAAATTATTTTCTCGTCTTTTCTGCAAATTCTCTTCGTTTTTTTTTTCCGCTCTTTTCATTTGAGGAAAAAATTGAGACATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGTTGATTATGAGGACCAAAGGGTTTCCAGGGTAAAGAGCGTACCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAACGAAAGCAGAACTATGATAATGCTGCATATGGAGGGCTCACCCCTGAATATAATCAAGGATTCCAAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCNGCCATCTCTAATTCAGAAAGCTGCGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTTCTCANTCAGTGGTCTGGGATACCATGGTGCCTTCAAAAAAGAGGACATGTACAGGCCGTCCAAAGCATGCTTCTGTTGAGAAGCTCACAAAAGACTTATGTACCATTCTTCATGAACAACAGTCTTATTTTTCTGCTTCTTCTGAAGAGGATCTTCTTTTCGAAAGTGAAACACCNATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTAGATAATAAACAATGCCTAATGAGCGAGGCATATTCATGTTCTGGTACCATTCCTATGCTTAGTGGTTGCACTGGCACTGGCAAGAATTTTTCATCTCAAGGAGTTGCCAGAAACTCTGCTGACCATACAATGCAACAGGAGCAACATGAAAGGCATGTGTTTCTACACCAGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTGAATGATGTAGTGAACTATGAGGAGTTTTCAAGCAACTTGACAAATGAAGAGCAGCATCAATTACTGAAATATCTCCCTGTGGTCGATACCGCTAAACTTCCTGATAGCCTTAAGATGATGTTCGATAGCTTTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTNTTGGGGAAGGTGTCTTTGATATCTCTTTGTTGGGGGCAAAACTTGAAGACTGCAAGATGCTGAAAAGGCTTGCATTATCTAATCCGTCAAAGTCAAAATGGGTAGAACNCTATAATTTTCTCAAGAGATGTGGAAACAAAGCTGGAATATGTAATGATATGGAATCTCCTGCTGTGGCATCAAGCAATGTTGCAAATATCAAGAGATTGCGTGACAGCCCACATCAAAATTTTCCAGAATTGAGGACAGAAATGAGGAGCCCCAAAAGGGTGATCATAAAGGCTGGATGTGGGGGCAAAGGAGTTGTAGATGGCTCTAGCTTCAGTCCAAAAAGCCTATTTCGATTGCCTCGTGATGGTAGCTTGCGTATGCTGGATTCTTCAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTTGAGGTTCCATCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCATCCAACAACTTCAAGCTCGGGTGCTCAAGGCAGNACCAGTAGTAGCTCAGCATACTCACATGTTCCTCATCCTTGACTAGTCTTTACTAGGTTTACCTGGACAGAATTTTNTGTCTGATTAGAGTCCACATGTTTTGCCTCTTAAACACCAAAATCCCTTTTACAAGAGATATGATGGTTGTGCTTTTGTTTCCTTGCAACATTGTTGAGCTTGGATTGCTAAAGGGTGCAAGTTGAATGGGCTTTTTTTTTTGTATAGGTTGGTAATAGATTGTAACATATATATATATAGCAGCATGAAATGAGGAGTGGTAATCTCCAGAGTTTTGTATGCGATTGTAGTTTATGTTTTGTGAATTATTTGACACCTTTTTTCACCCACAGAAACCCCAACATTCATCTAAAGAAATAAATAGATGACAACTTTATGGGATGAATGAGGAAGATNTGGACAATTATTCTGTCTGTAGTTAAATTGCAAATCGTTTGACACTTTGTGAATTGNCATTCTATAGGTGCATGGGATGCATGGATCCCTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	127150	133010	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006360.1	PF00320.22	GATA	7	41	1.40E-13
Glyur000067s00006360.1	PF13919.1	ASXH	288	405	1.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.787
SRR1783600	control	9.927
SRR1783602	moderate drought stress	8.329
SRR1811619	moderate drought stress	8.238

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.667
DRR006520	Root Summer glycyrrhizin high producing strain	18.457
DRR006521	Root Winter glycyrrhizin high producing strain	12.984
DRR006522	Root Winter glycyrrhizin high producing strain	12.854
DRR006523	Root Summer glycyrrhizin low producing strain	15.521
DRR006524	Root Summer glycyrrhizin low producing strain	15.397
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.027
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.552
SRR2868004	Drought Stress (root)	15.576
SRR2967015	Control (root)	13.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.202
SRR9715740	Leaf	7.747
SRR9715741	Leaf	11.385
SRR9715739	Root	4.190
SRR9715742	Root	11.039
SRR9715743	Root	10.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.294
SRR8749028	MeJA induced 9h	32.740
SRR8749029	MeJA induced 9h	34.762
SRR8749030	Uninduced	19.071
SRR8749031	Uninduced	30.527
SRR8749032	Uninduced	37.480

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.865
SRR8400027	Control - Root	17.987