Gene detail

Gene detail information of Glyur000067s00006357

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47180.2	7.00E-66	Plant VAMP (vesicle-associated membrane protein) family protein
NR	XP_004508956.1	3.14E-120	PREDICTED: vesicle-associated protein 2-1-like [Cicer arietinum]
Swissprot	tr\|Q9LVU1\|VAP21_ARATH	4.00E-92	Vesicle-associated protein 2-1, N-terminally processed
trEMBL	tr\|I1MV63\|I1MV63_SOYBN	1.00E-108	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G15590.1}

Sequence

Transcript Sequence

>Glyur000067s00006357.1
CCACGTTCAGTCCGGTATTTTTCTATCTAGTGTGAGAGCCGCACTTCTGAACCGGACGCCAACCTTAATTCCGCTGGACACGTGTAGCACCCTTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTCTCTCTCTTCCATGGTTCTGCCATATCCATCGGAGGGGTTGAAGAGCCCAACACAACACAGGCACCAAACTATCGTGTTTCCGCCAGAAACAGAAACAGAGGGCACGACACAGAAATTATAAGCATTGCTAATTTGTTATTTGAAAGTTCGATCCCTTCGTCATGACTGATTCTGTTGCAAATTCGTTCATAACCGTTAATCCTGATGAGCTCCGGTTCCAATTTATATCTCATAGGAGATCTTCTACTTCTCTTGTTTCCAATTGTGCATTTTGGTTTTCCCTATTATTTGAGCTGGAGAAGCAAACATTTTGCGATCTTAAAGTTTTGAATAACACTGAGTACCATGTTGCTTTTAAGGTCAAAACCACTTCACCTAAGAAGTATTTTGTACGACCTAACACTGGTGTTGTACATCCATGGGACTCGTGTATCATCAGAGTCACCCTCCAAGCCCAACAAGAGTATCCTCCAGACATGCAATCCAAAGATAAGTTTCTCATACAGAGTACAAGAGTGGATGCAAACACTGATGTTGATGAGCTTCCGCCAGATACCTTTAATAAGGAAAGTGGAAGGTCAATAGAAGATTTGAAACTAAGAGTTCTATATATCTCTCCTACCTCACCTCAAAGAAGCACGGAAGATGATACAGTGAAGAANTCCGCACAAAAACTTGATCCTTATTCTAGTCAAACCCTACAACGCCTGAAGGAGGAAAGAGATGCCACTGTCAAACAAACGCGGCAACTGCAGCAGGAACTGGACATGCTGAAAAGGAGAAGATATCGTAGAAGCGATCCGGGCTTCTCCTTCACCTTTGCCATGTTTGTGGGTCTTATTGGATTCTTGTTTGGTTTGCTTTTGAAACTTTCGTTGTCTTCACCACCAGTACCTACCGAATGATTTTCATACTGTTTTGAACCTTTCCATGCCGACCCTTTCTTGTTGTTCATTGTAAAGTTCTATTTTCTGTTGAATGGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	108328	113349	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006357.1	PF00635.21	Motile_Sperm	44	134	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.021
SRR1783600	control	9.104
SRR1783602	moderate drought stress	11.394
SRR1811619	moderate drought stress	11.060

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.993
DRR006520	Root Summer glycyrrhizin high producing strain	14.529
DRR006521	Root Winter glycyrrhizin high producing strain	28.965
DRR006522	Root Winter glycyrrhizin high producing strain	28.438
DRR006523	Root Summer glycyrrhizin low producing strain	15.802
DRR006524	Root Summer glycyrrhizin low producing strain	16.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.220
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.124

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.251
SRR2868004	Drought Stress (root)	10.881
SRR2967015	Control (root)	9.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.829
SRR9715740	Leaf	7.435
SRR9715741	Leaf	9.722
SRR9715739	Root	4.587
SRR9715742	Root	7.107
SRR9715743	Root	5.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.078
SRR8749028	MeJA induced 9h	28.799
SRR8749029	MeJA induced 9h	43.341
SRR8749030	Uninduced	24.427
SRR8749031	Uninduced	18.410
SRR8749032	Uninduced	27.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.630
SRR8400027	Control - Root	13.895