Gene detail

Gene detail information of Glyur000067s00006351

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16820.1	2.00E-155	alpha/beta-Hydrolases superfamily protein
NR	XP_003524096.1	0	PREDICTED: phospholipase A1-Ibeta2, chloroplastic-like [Glycine max]
COG	YP_008088318.1	1.00E-12	Predicted lipase [Chthonomonas calidirosea T49]
Swissprot	tr\|O23522\|PLA14_ARATH	0	Phospholipase A1-Ibeta2, chloroplastic (Precursor)
trEMBL	tr\|I1K0U6\|I1K0U6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G05230.1}

Sequence

Transcript Sequence

>Glyur000067s00006351.1
ATGATGCAGATCAGCTCCACCTTACCAGCACACAACCTCCACATGTTCCAGACAAGACGCGCCAGCTTCACATGCCGAGCCTCACCCTTGAACCCTTCCAATTCCAATATCAACCCAAACCCACCGGCCACCTCCACCGACTCCACTCGGTTGCACCTCTCCAACCTCGACAAACTCCTCCAGAAACCACCCACTCAACTCAACCTGCATCACCAGATACAGCAACAGCAACAGCAACGACACCCACCCACCCAAAACAACAACAACCAAGAGCCAACGGCGGCAATAACGACAGCGGAAAAGAAAGGAAGGAACATTCTGGAAGGCCTCAACCTGGCGAGGCTGTGGCCGGACATGAAGGCCACGGAGGAAATGTCNCCGCGGCACCTCAAGCGCCTCCAGCGCCTCCTCTCGAAGACGGGAGAGTACTCTCCCCGCAACGCCCTCGGCAGCCACTGGAGGGAATACCACGGCAGCAACGACTGGAAAGGCATGCTCGACCCCCTCGACGACAATCTCCGGCGAGAGGTGGTTCGCTACGGCGAGTTCGTCCAGGCCGCGTACCACGGCTTCCACTCCAACCCCGCCATGTCGGCTCAGGACCCACCCCTCCCACGCCACGTGGCACTCCCCGACAGGTCCTACAGGGTGACCAAGAGCCTCTACGCCACGTCATCAATCGGGTTGCCAAACTGGGTCGACGACGTGGCCCCGGATCTCGGGTGGATGACCCAGAGGTCCAGCTGGATCGGATACGTNGCCGTCTGCGAGGACAGGAGGGAGATCGCGCGACTGGGGCGGAGGGACATCGTTATCTCCCTCCGCGGAACCGCCACGTGTCTGGAATGGGCCGAGAACATGAGGGCCCAGCTAATCGACGTGCCCGGCGAGAGTGAAGCCCAACAGGGAAAGCCCAAAGTGGAGTGCGGGTTCCTCAGCCTGTACAAGACGAAAGGGGCCCACGTGCCGAGCCTGGCGGAGTCGGTGATCGAGGAGGTGAAGCGGCTCATGGAAGTGTACGAGGGGGAGACGCTGAGCATAACGGTGACGGGGCACAGCCTGGGAGCGGCACTGGCCGTGTTGGTGGCNGACGACGTCAGCAGGTGCAGCCCACACGTGCCGCCCGTGGCTGTTTTCTCATTCGGTGGGCCCAGGGTAGGTAACAAGGCCTACGGGGACAAAATCACCGCCCAGAATGTGAAGGTCCTAAGAATAGTGAACTCGCAGGACGTGATCACACGGGTCCCAGGCGTGTTTGTGAGCGAGGAGCTGGAGCAGAAACTGAGGAGCTCCAAGGTTGTTGGTGATGTGCTTGACACGTACTCGCACGTGGGGGTTGAGCTGCGCGTGGACACGAAGATGTCGCCGTTCCTGAGGCCGGATGCTGACATGGCATGTTGTCATGACCTGGAGGCTTACCTNCACTTGGTGGATGGGTTCATGGCTTCTAACTGTCCATTCAGGGCCAATGCGAAGAGGAGCTTGGCTAGGTTAATGCAGGACCAGGGATCCAATGTAAAGAAATTGTATACTAGCAAGGCTAAAGCATTGAGTGTGAGTGTTAGTGTGAATCTTGAAAGACANGGATCTTTCTCGATCTCTGGTTGTTTGCCTAGTCCATCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	87139	88764	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006351.1	PF01764.20	Lipase_3	271	418	6.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.409
SRR1783600	control	6.006
SRR1783602	moderate drought stress	8.780
SRR1811619	moderate drought stress	8.107

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.455
DRR006520	Root Summer glycyrrhizin high producing strain	14.801
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.938
DRR006524	Root Summer glycyrrhizin low producing strain	6.006
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.997
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.411

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.979
SRR2868004	Drought Stress (root)	25.253
SRR2967015	Control (root)	36.086

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	61.413
SRR9715740	Leaf	34.612
SRR9715741	Leaf	37.436
SRR9715739	Root	62.819
SRR9715742	Root	115.572
SRR9715743	Root	102.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.813
SRR8749028	MeJA induced 9h	7.120
SRR8749029	MeJA induced 9h	8.583
SRR8749030	Uninduced	11.194
SRR8749031	Uninduced	4.361
SRR8749032	Uninduced	5.993

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.172
SRR8400027	Control - Root	14.793