Gene detail

Gene detail information of Glyur000067s00006348.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16800.1	1.00E-107	ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NR	XP_006579373.1	0	PREDICTED: uncharacterized protein LOC100526933 isoform X1 [Glycine max]
COG	YP_007422571.1	1.00E-76	Enoyl-CoA hydratase/isomerase [Bacillus thuringiensis serovar kurstaki str. HD73]
Swissprot	tr\|Q39659\|MFPA_CUCSA	3.00E-27	3-hydroxyacyl-CoA dehydrogenase
trEMBL	tr\|I1K0U5\|I1K0U5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G05200.1}

Sequence

Transcript Sequence

>Glyur000067s00006348.1
GAGGCGATAAAGCAAAATGATCAGCGAGACAGAGATAGAGATCGCGTCCGAANAAGCAGTGGAGAAGGGAAGTGAACCTCAATTCAGAAACGAACAATGAAAGCAAAAATGTGCGCTTTGAGAGTGTTGACCAGGTTTGCGTGCAGCAGCTCCTACTACGTGAAAACTTCCAAACCCTATCTCCCGCTCAATTTCACCACACTGTATCAGCACCACAGCCGCAGGAGCCTTATTTTGGAATCTTCCGCTTCTGAATTCGTCAAGCTTCACAGACTCGCTGGCTCAGATTCCGGGATTGTTGAGGTTAACTTGGATAGGCCTGAAGCTAAAAATGCTATCGGGAAAGACATGCTGCGAGGCCTAAGTCACGTGTTTGAATTGATTAATCAGAGTTCCGATGCTAATGTTGCTATTATCAGCAGTTCAGTTCCTGGGGTATTTTGTGCTGGGGCCGATTTGAAGGAGCGCAGGACCATGAATCAATCAGAGGTTAAGTTTTTTGTGAATTCTCTTCGTTCCACAATGTCATTTCTAGAGGCAATTCGTGTACCAACTATTGCTGCTATAGAAGGAGTAGCTCTTGGTGGTGGACTTGAAATGNCTTTGGCGTGTGATATTCGAATATGTGGAGAAAATGCTCTGATGGGTTTGCCAGAGACAGGACTTGCTATAATCCCTGGGGCAGGTGGAACACAGCGACTACCAAGATTAGTTGGAAAATCAATAGCAAAGGATATTATATTTACTNGTCGAAAGATTAACGGCAAAGAGGCTGTATCCATAGGTCTTGTCAATTACTGTGTTCCTATTGGTGAAGCTTACTCCAAGGCACTTGCAGTTGCTCGGGATATCAATCAGAAGGGTCCTGTAGCAATAAGGATGGCTAAAAGAGCTATTAACGAGGGTGTTGAGACTGATCTAACATCAGCTTTGGTTTTGGAAGAAGATTGTTATGATCAGGTGTTGAATACTAAAGATCGACTAGAAGGCTTGGCTGCATTTGCTGAAAAGAGGAAACCAAGGTATACTGGTGAGTGAAAGGAATGGTCTTCTGGTGACTATCTCTCTATCTATTTTGCTAGAGAGGAATGTCTATCATGTAGTGATTAAAGTGATGTAGAGTCTGGAGGCAACTTACCTAGTTGAGGAAGTGTCACTACAGTTTGCCCCTTTTACTACAGTCAAATTCCTAAAGCTGAAAAGTGTCTCTCTATAATCATGCACCTTGAGACACTATTCATAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	61959	65706	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05607	AUH	EC:4.2.1.18	Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006348.1	PF00378.15	ECH	64	305	5.10E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.191
SRR1783600	control	13.255
SRR1783602	moderate drought stress	17.001
SRR1811619	moderate drought stress	17.075

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.943
DRR006520	Root Summer glycyrrhizin high producing strain	16.878
DRR006521	Root Winter glycyrrhizin high producing strain	11.047
DRR006522	Root Winter glycyrrhizin high producing strain	10.359
DRR006523	Root Summer glycyrrhizin low producing strain	17.034
DRR006524	Root Summer glycyrrhizin low producing strain	17.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.966
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.207

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.391
SRR2868004	Drought Stress (root)	27.016
SRR2967015	Control (root)	28.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.200
SRR9715740	Leaf	16.262
SRR9715741	Leaf	14.395
SRR9715739	Root	6.635
SRR9715742	Root	10.947
SRR9715743	Root	11.118

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.472
SRR8749028	MeJA induced 9h	14.239
SRR8749029	MeJA induced 9h	13.660
SRR8749030	Uninduced	9.988
SRR8749031	Uninduced	4.446
SRR8749032	Uninduced	4.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.673
SRR8400027	Control - Root	21.972