Gene detail

Gene detail information of Glyur000067s00006347.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17510.1	2.00E-85	ubiquitin C-terminal hydrolase 3
NR	XP_003524078.1	4.39E-130	PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Glycine max]
trEMBL	tr\|C6T574\|C6T574_SOYBN	2.00E-130	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU361215} (Fragment)

Sequence

Transcript Sequence

>Glyur000067s00006347.1
CGAATACATATAGCCCCTTCACTTACATTGTTGTTTTCGATTCATCATCGGAGAGCTTCGAAGTACATAAGCATAAAACCGCATTAGAAACCAAAAAGGAAAGAGAGAAGCGTAGAATGGCTACCTTAAGCGAACCTTCTGTGAAAAGGTGGCTTCCTCTTGAAGCTAACCCTGATGTCATGAACCAGTTCCTTCGGGGTCTCGGCCTTCCAGAGAATGAGGCAGCGTGCTATGATGTTTATGGCTTAGATGAAGAGCTTTTGGAAATGGTTCCAAAGCCAGTTCTCGCCGTGCTTTTTCTTTATCCCCTTACTGCCAAGACCGAAGAAGAGAGGTTGCAACAGGAAAATGAAAAAAAGGAATATAGCAATAAAGTGTATTTCATGAAGCAAACTGTGGGTAATGCTTGTGGTACCATAGGGCTTCTTCATGCTCTTGGTAACATAACTTCTGAACGTGCTGTATTTCTTGAGAATGACAAAGAGATGGAAGTTGCTCATACAGTAGCAGCCTCTGCTGGTGATACAGAGGCATCAGATAACGTGGATACTCATTTCATCTGCTTTGCTTGTGTGGATGGTGAACTTTATGAGCTTGATGGAAGAAAGTCAGGAGCAATATCTCACGGTCCATCCTCACCAAATACTCTCTTGAGGGATGCAGCTAAAGCCATCCAGAGCATGATCCAGAAAAATCCAGATTCGCTCAACTTCAATGTCATTGCAATATCAAAGAAATCCAGTGATGCATAATAATGCAGTCAATTTGGTCCTTTTTGGTGGGTAGCATCGAAGCAACTTCTTTAAGTTAATCTATAGTATAATCCCCAGGCATTCATGCAGCTTTTCATTCACTTTATCTCTGTGTATGCTNGGATTTTTATTTTCATTATGTGATCTAGCAAGCGGAGCCTCTTTCATTAAAAATTGATGCAGTGCGAGTAACATTTCATGATGAACATTTCGGAAATATATTTATATAATTTGAAACGAATGCCACCAAGGTATTAGTGAGCCTCTAATGTCTTGGGCGATGTGACAAATTTGAAAGGCATGCCATGATGCCAAGAGCCATAGGTTGAAGAGAGGGGGGAAGCAGCGCTATAACTTGGGGTTATAAGAAGAACTCCGAGTTGACATCAAATTTCCTCAACATTTCCAATTTGTGATTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	52709	58075	-

Gene family

Gene family	subfamily
Ubiquitin Family	UCH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0005622 intracellular

molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006347.1	PF01088.16	Peptidase_C12	11	111	2.20E-34
Glyur000067s00006347.1	PF01088.16	Peptidase_C12	112	192	4.90E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.372
SRR1783600	control	39.769
SRR1783602	moderate drought stress	31.577
SRR1811619	moderate drought stress	31.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.549
DRR006520	Root Summer glycyrrhizin high producing strain	55.569
DRR006521	Root Winter glycyrrhizin high producing strain	53.622
DRR006522	Root Winter glycyrrhizin high producing strain	52.868
DRR006523	Root Summer glycyrrhizin low producing strain	37.246
DRR006524	Root Summer glycyrrhizin low producing strain	36.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.578

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.309
SRR2868004	Drought Stress (root)	39.260
SRR2967015	Control (root)	37.485

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.851
SRR9715740	Leaf	47.453
SRR9715741	Leaf	42.456
SRR9715739	Root	18.086
SRR9715742	Root	35.945
SRR9715743	Root	32.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.788
SRR8749028	MeJA induced 9h	62.415
SRR8749029	MeJA induced 9h	75.349
SRR8749030	Uninduced	46.036
SRR8749031	Uninduced	41.547
SRR8749032	Uninduced	48.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.457
SRR8400027	Control - Root	58.763