Gene detail

Gene detail information of Glyur000067s00006344

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47240.1	2.00E-122	nudix hydrolase homolog 8
NR	NP_001241031.1	0	uncharacterized protein LOC100815507 [Glycine max]
COG	YP_944432.1	2.00E-45	ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37]
Swissprot	tr\|Q8L7W2\|NUDT8_ARATH	2.00E-151	Nudix hydrolase 8
trEMBL	tr\|C6TEN2\|C6TEN2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G15420.1}

Sequence

Transcript Sequence

>Glyur000067s00006344.1
ATTGATTTTTTTGTCATGATCACGCATCGCTCATTATGCACCACAAGTTTAAAGGACGCCAAACAAGCCAAGTTTGGCCAAGATACTCACTCGGGATTTTACATAACTTGTCCCAATGTGGGTTATAGGCATATAGCAGATAGATGATTTTGTTTGCGCCTCATTGGATTATTATCAAGCTTCTTAACTCAAAGCATGGGAAAGGAGGCTATAATACACTCAGAAAAAATGATGAATCCCATGACCATGATGTTTCTTTAGTCATAGTTCGATACCTGCTATGGTTGCCTTGATTTTGCTGAAGATTCTCATCCATATATAATTATATATTCGCCCCCTCAAAGTGTATATATGTACCCGGATTGTGATTCCATTTGACCGTGGAATTGTGGCTACCAGTGTCAGTGTTTGGGTTCTGACCACTGATTAAGATGGAGCTGAATTCCTTCTCTTCCAATTCTGTCTCCACATTTGAGGTTGCCCATGTTGGAAGATCTTCCTCCACTTTCCTCTCCAGTTTCAGGCACAAAGTTGGAGTTAGATTTTCTACCCAGTTCAAGTGCCGCAGAGGGTTGTTTCTCAGGACTTGTAGTGGTGCCTCGGATGACTCTTATTTGGCAGATAAAGCTGTCATTTGTTCAATTGGTCCAGATAATGTTGTAGCAGAAACGAGTTCCCATTGTATTAATGGAATAAATGGCTCAGCTTCAAGCTTCTATTACAGGAATCTTAGAGTACTTGATGCCTTTGATGATGAGTATGGGGGGGTTGTCATTGATCCAAGTAGGTTACCACCCAACCCATATGCCTTTGCACCTTTGCTGCGTTTATCTCTTTCTCAATGGAAAAAGATGGGAAAGAAGGGAATTTGGCTTAAGTTGCCATTAGAGCAATCTGACCTTGTCCCAATTGCTGTGAAGGAAGGTTTTCAATACCACCATGCAGAGCCAGGATATGTGATGTTAACCTATTGGATTCCTGAAGGACCTTGCATGCTTCCAGCAAATGCATCACATCAAGTAGGAGTTGGAGGATTTGTCATCAATGACAACAATGAAGTGCTTGTAGTGCAAGAGAAACACTGTTGTCCTGAAACTCTTGGGCTTTGGAAGATACCAACTGGATTCATTCATGAGGCAGAGGAGATATANACAGGAGCTGTAAGAGAAGTGAAAGAAGAAACGGGGATTGATACAGATTTCATTGAAGTCATAGCATTCAGGCATGCACATAATGTGGCCTTTGAGAAATCAGATTTGTTCTTCATCTGTATGCTAAGACCCCTATCATCTAAGATCATTGTTGATGATCTTGAAATTGAAGCAGCAAAGTGGATGCCCCTGGTTGAGTTTGTAGAGCAACCACTTATCCAAGAAGATTCCATGTTCAAGAAGATAGTAGACATCTTTATTGCTCGTCTTGGGAAGCGTTATTGTGGCCTATCAACTCATCAAGTAGTTTCCAAGTTTGATGGCAAGACCTCTTCCCTATACTACAATGTCATCGAAGATGTCAACTGTGTTGGAAACTAGGGCTCTAAAAGCTGAGAACTAGGCTAACCACTACACTACTACATATATCCAGTATAATATGTATGTAACATATATATAAGGGCAATTTTATTTCCCAATGTATATAAATGTCAATATCAATAACAACTTTGCTAATGGAACATCCCCTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	23715	27151	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006344.1	PF00293.23	NUDIX	196	312	2.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.501
SRR1783600	control	10.536
SRR1783602	moderate drought stress	21.192
SRR1811619	moderate drought stress	21.103

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.447
DRR006520	Root Summer glycyrrhizin high producing strain	25.243
DRR006521	Root Winter glycyrrhizin high producing strain	1.335
DRR006522	Root Winter glycyrrhizin high producing strain	1.355
DRR006523	Root Summer glycyrrhizin low producing strain	16.985
DRR006524	Root Summer glycyrrhizin low producing strain	17.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.939

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.750
SRR2868004	Drought Stress (root)	42.803
SRR2967015	Control (root)	50.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.587
SRR9715740	Leaf	59.829
SRR9715741	Leaf	39.326
SRR9715739	Root	3.885
SRR9715742	Root	10.538
SRR9715743	Root	9.107

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.337
SRR8749028	MeJA induced 9h	0.080
SRR8749029	MeJA induced 9h	0.197
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.029
SRR8749032	Uninduced	0.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.447
SRR8400027	Control - Root	27.341