Gene detail

Gene detail information of Glyur000067s00006340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16780.1	2.00E-81	homeobox protein 2
NR	XP_003549927.1	1.92E-171	PREDICTED: homeobox-leucine zipper protein HAT4 [Glycine max]
Swissprot	tr\|A5Y7H8\|HAT4_ARATH	8.00E-109	Homeobox-leucine zipper protein HAT4
trEMBL	tr\|V7CEB5\|V7CEB5_PHAVU	2.00E-165	Uncharacterized protein {ECO:0000313\|EMBL:ESW27688.1}

Sequence

Transcript Sequence

>Glyur000067s00006340.1
CCCTCTCTGTGTGGAAAATATCACCCTCTTTATTATCGCCTAAACCTTTTCTACCCAGTAGCCTCAAACTGATCAGTCTGAGAGTACACAAGTTATTCAAAGCTAAAGTGCTTAATTTGTGTCCTGTCTTACAATAGAGATGATGGTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCTTGAAGTCGTTCCCTCAGATCAATACCCCAAATCCTCACCCTCTGAATCTCATGTCGTCTTCTACTTATTCCTCTTCTCCTTCTGGCTGCGATCCTCAGAAAGTACCCTCTTGGAACGAGGCTTTCACCTCCTCGGATCGAAACTCGGAAACATGCAGAGGGGAAGTTCGGGCTTTCCTACGCGGAATCGACGTGAATCGGTTACCATCTGCGGTTGACTGCGAAGAGGAAGCAGGGGTTTCTTCTCCAAACAGCACCGTTTCGAGCGTGAGTGGGAAACGGAGCGAGAGGGAGCCCAATAACGGCGAAGACCATGACGTGGACAGAGACTGTTCCCGAGGGATCAGTGATGAAGAAGACGCTGAAACTTCACGGAAAAAACTTAGGCTCTCCAAAGACCAGTCAGCTATTCTCGAAGAGACCTTCAAAGAACACAATACCCTTAATCCCAAACAAAAGTTGGCACTGGCAAAGCAGTTAGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCTAGGACCAAGCTGAAGCAAACAGAGGTCGATTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAANGAAGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAGATGACCCCACCAACGACCCTCACTATGTGCCCATCTTGCGAGCGTGTGGCTGTTCCATCCTCCGCCGTTGATGCTGCCACCCGCCATCACCGGCCCATGCCCATTGGCCCATGGGCTTCTGCAGCTCCCCTCCCGCAGCGGCCGTTTGATGCCTTCCGTCACTGATGATCCATGCATGGCGTTTCAGGGTGATTTGGTCATTGTAGCCTTGAGGGGAGTACCCCAAAAGAAAAAAGTTGGGGGAAACGGTTGTAATAGCTAGCGTGCCCTGGAATCGTGTGTTCCAAAGTGCGGTCTAGGATATGGTGACTGGAAAACGTGATTTGGTGGGTCTCCAATGTTTTGTACCAGTTTGACCCATCATCTTGCGTTTTATTGGGTATNACCTATTTAGCTAGGAGTAGTTTTTAAAATACTTGACTCTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	1717	3500	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006340.1	PF04618.7	HD-ZIP_N	1	111	2.50E-29
Glyur000067s00006340.1	PF00046.24	Homeobox	138	192	2.10E-16
Glyur000067s00006340.1	PF02183.13	HALZ	194	237	7.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.744
SRR1783600	control	4.755
SRR1783602	moderate drought stress	3.025
SRR1811619	moderate drought stress	3.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.215
DRR006520	Root Summer glycyrrhizin high producing strain	4.114
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	14.195
DRR006524	Root Summer glycyrrhizin low producing strain	15.070
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.023
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.995
SRR2868004	Drought Stress (root)	44.336
SRR2967015	Control (root)	39.781

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.940
SRR9715740	Leaf	1.533
SRR9715741	Leaf	0.778
SRR9715739	Root	7.730
SRR9715742	Root	8.612
SRR9715743	Root	8.810

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.916
SRR8749028	MeJA induced 9h	15.211
SRR8749029	MeJA induced 9h	27.349
SRR8749030	Uninduced	4.126
SRR8749031	Uninduced	1.132
SRR8749032	Uninduced	4.390

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.167
SRR8400027	Control - Root	6.083