Gene detail

Gene detail information of Glyur000066s00006269

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45660.1	1.00E-88	Major facilitator superfamily protein
NR	KHN30233.1	4.29E-160	Putative nitrate excretion transporter 2 [Glycine soja]
Swissprot	tr\|Q9M1E1\|PTR38_ARATH	1.00E-122	Protein NRT1/ PTR FAMILY 2.6
trEMBL	tr\|I1M4P2\|I1M4P2_SOYBN	6.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G40450.1}

Sequence

Transcript Sequence

>Glyur000066s00006269.1
ATGGACCCAACCACTGCGAATCCCCTTCACAACTCCAATACGCTGTTCTTTATGTGGGTACAGCGCTGGTGGCAATTGGTTTCGGTGGTGCACGTTTCACAACGGCAGCGCTGGGCGCCAATCAGTTTGACAAGGCAGAGGCATCAGGGGAGTTTCTTCAACTGGTTCTTTTTCGCCATGTACTTTGCTTCTTTAGTGGGCCTAACTGGGCTTGTCTATGTTGAGGATGGTATGAGTTGGGCTTTGGGCTTTGGTATCTGTGGTGTGGCCAACTTGATTGCTGTCGTCATTTTCTTATTGGGCTATCGGTTTTATCGGCCCGAAAATCCACAAGGAAGCGCGTTGTTGGATCTGGCCCGTGTGCTTGTTGCCACCATTCGTAAATGGAAGTCTCAGCTCTCCTCTAGAGTAGAGGATTACTATAGTGGACATGATGCTCTGATAACAGATGGAGACCTTCAATCAGATGGCTCAATTGAGAAANGGTGGAAGCTATGCACAGTTCAACAAGTGGAAGATTTGAAAACAACAATTGGAATCCTTCCACTGTGGACTTCAAGCATATTCCTCGCCACTCCAATTGGAATCCAAGGCAGCTTGTCAGTCCTTCAAGCCTTAGCCATGGACCGTTCTCTTGGACCCCATTTCAATATCCCAGCTGGCTCTATCTCTGTTATATCCCTTCTATCAACATCCATCTTCCTCATCTTTCTTGACAGGAGGCTGACCGGGAAATCTCCCACGCCGCTCCAGCGAATAGGAGTAGGCCNCGTGTTGAATGTGCTTGCCATGGCCATCTCTGCTCTTGTTGAATCAAAGAGGCTCAAGAATGTTATAGCACATGATGGCAGTGACAGCACAATGGCCATGTCTGTCCTCTGGTTGTTTCCACAGTTAGTGTCGGTGGGCATTGGAGAAGCTTTTCATTTCCCGGGACANGTTGCACTCTACTACCAACAACTTCCACAATCACTGAGGAGCACTTCAACTGCAATGATCTCCATGCTTATAGGGATTGTTTTTTACCTTAGCACGGCCTTAATTGACCAAGTTCGTAGGAGTACTCATTGGTTGCCTGATGACATAAATCATGGGAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	415859	418300	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006269.1	PF00854.16	PTR2	46	333	2.50E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.368
SRR1783600	control	0.432
SRR1783602	moderate drought stress	0.411
SRR1811619	moderate drought stress	0.578

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.608
DRR006520	Root Summer glycyrrhizin high producing strain	1.788
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.200
DRR006524	Root Summer glycyrrhizin low producing strain	0.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.167

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.189
SRR2868004	Drought Stress (root)	9.925
SRR2967015	Control (root)	10.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.694
SRR9715740	Leaf	0.299
SRR9715741	Leaf	0.163
SRR9715739	Root	0.045
SRR9715742	Root	0.140
SRR9715743	Root	0.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.134
SRR8749028	MeJA induced 9h	0.070
SRR8749029	MeJA induced 9h	0.165
SRR8749030	Uninduced	0.171
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.126
SRR8400027	Control - Root	1.691