Gene detail

Gene detail information of Glyur000066s00006263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28510.1	4.00E-34	Dof-type zinc finger DNA-binding family protein
NR	XP_003539737.1	5.99E-126	PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max]
Swissprot	tr\|Q8LE43\|DOF21_ARATH	3.00E-48	Dof zinc finger protein DOF2.1
trEMBL	tr\|I1LR01\|I1LR01_SOYBN	2.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G07710.1}

Sequence

Transcript Sequence

>Glyur000066s00006263.1
CATCATCTTCTAGTACGGCAAAAACCATCATTATCCCCCCACTCTCTCTCTCTTGGGATTGCTTACTTTATATATATATATATAGACAACACCTGTGGTTACTTCTATTACCAACCTTATTCTGCATGACACTCTAAACCATCTCAATTCTCCCTCTTAATTAACTTGCTCTCATACCCTTTCCCTTTTCTTCTTCTTTTTTCCCGTTCAGTAACTACAATCAAGCACATAGATAGATCATACACACCCCACATACACAAAAGCACGCCTTAATTTCGACCTGAAGAGTTTCTAATCTGACTCTGAATATTGTATGGATGGATCCTTCTAGTGGACAAGNCCAGCAAATGTCAAGCCAGTCATCACTGGAGAACATGTTAGATTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGACCACAGCCAGAACAAGCTCTGAAGTGCCCCAGATGTGACTCCACCAACACCAAATTCTGTTACTACAACAACTACAGTCTTTCCCAGCCAAGGTATTTCTGCAAATCCTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGGAAGAACAAAAGGTCCTCATCATCATCATCCTCATCTTCATCATCGTCAAAGAGGGCTCAGGATCAGACATTTGCACCACCCAATCTCAACCCATTTACCACTACCCTGCCTCATAATTATGATCAGTACTCCAGTGACTTCACTCTGGCATTAGCTAGGCTTCAGAAACAATCATGTGGAGTACAATTGGGTTATGATGATCATGACCAAGATCTTTCAATTCTGGGGAATCCCACAGCCACAAGANCCTTTTGTGATATTCTTGGCAATTCAGGCATGAACCCCCCTGCAGGAGGAGGACTCTTTGATGCACTTAGAACTGGGTTCCTTGNAAGCAGTGGAAACCAGTATAATAATAACAATAATGTTCAGAATATGTATGGTGGTGTGTATGGAAATGGGGACACTGGGGAGGTGGATAGTGGCAACAATGTTCAGATGATGCTCCCTAATTATGACCAAGAAATGAGCAATGCAGCTACTCAAGCACAAGCAGTGAATATCAGTACCATGAAGCAAGAACTATGCAGTGGCAGGGAACAAAGTGAAAGTAACAATAAGGTGTTGGGGGGTTTTCCTTGGCAGCTCAATGGAGGTACAAACANGGGTGAATTTGATTCAGGAAGGGCAAGTTGGAATGGTTTCACATCTTCTTGGCATGGACTTCTCCATAGTCCCCTGATGTAGAATTATCAGAAAAAGCACACTGATTTTTCCTCTAATGTTTGACTAAATTATATATCAGTCTTAATTAAACTGTGTCAATCCTCTTGAGTAGTTTTGCCTTTGGGTTAATAGAGAGATTTGGTTCACTTGAATCCGGTACTCTCTTTTTATCATTGTTTGTTTTCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	382246	384343	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006263.1	PF02701.10	zf-Dof	36	97	4.70E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.624
SRR1783600	control	7.671
SRR1783602	moderate drought stress	7.572
SRR1811619	moderate drought stress	7.534

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.558
DRR006520	Root Summer glycyrrhizin high producing strain	16.274
DRR006521	Root Winter glycyrrhizin high producing strain	1.780
DRR006522	Root Winter glycyrrhizin high producing strain	1.658
DRR006523	Root Summer glycyrrhizin low producing strain	19.158
DRR006524	Root Summer glycyrrhizin low producing strain	19.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.665

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.396
SRR2868004	Drought Stress (root)	25.747
SRR2967015	Control (root)	27.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.364
SRR9715740	Leaf	1.359
SRR9715741	Leaf	2.893
SRR9715739	Root	2.688
SRR9715742	Root	9.357
SRR9715743	Root	6.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.692
SRR8749028	MeJA induced 9h	0.046
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.943
SRR8400027	Control - Root	19.028