Gene detail

Gene detail information of Glyur000066s00006260.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G29900.1	carbamoyl phosphate synthetase B
NR	XP_004487142.1	PREDICTED: carbamoyl-phosphate synthase large chain-like [Cicer arietinum]
COG	YP_007065243.1	carbamoyl-phosphate synthase large subunit [Calothrix sp. PCC 7507]
Swissprot	tr\|Q42601\|CARB_ARATH	Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBL	tr\|G7IU57\|G7IU57_MEDTR	Carbamoyl-phosphate synthase large chain {ECO:0000313\|EMBL:AES67407.1}

Sequence

Transcript Sequence

>Glyur000066s00006260.1
GATTCTCCTTTTTCTTTTTGTATTAAAAACAGAGCAATCCCAGAATCCTGAAGGTGACGGAGGACCATCCCCGCACCCACTAATAACTCTCTTTCCCCTTCACGGCGCACCCCCAACCCAAAACCAAAACCAAACAAAACAAACAAGGTGACAAACAAACAAACAAACCCTACTAAACCCACACTCAACACTCACTCGGCGCCTCCTTCAGTTACCACGGAACCCTAAAACCCACCCACAATGCCAATGGCCTATTGCATATCTCATTTCCACAAGCTCCCACTCCTCTCCTTCCCTTCCCATTCCCCTCGCTATTCCCCCAAACCCCTCGCCGGAACCACCACCACCACCTTCCTCCATTCATGCAGTTACCAGCTCGGAAAGTCACGGATTCGGTGCTGCCACAAACCTCCGCGCGACGTCTCCTCCTCCTCNGCCTCCACCGCCGTCGCCACTCCCGCGCCGGAGATTGCTTCCAAAGTTGGTAAGAGAACCGACCTGAAGAAGATCCTGATCCTCGGCGCGGGTCCCATCGTGATAGGCCAAGCCTGCGAGTTCGATTACTCAGGAACACAAGCATGCAAGGCACTGAAAGAGGAAGGGTANGAGGTTGTTCTGATAAACTCGAACCCTGCAACGATCATGACGGATCCCGAAATGGCCGACAGGACCTACGTAACGCCCATGACGCCAGAATTGGTGGAGCAGGTACTCGAATCGGAGCGCCCCGACGCCCTGCTTCCCACCATGGGCGGCCAGACCGCGCTGAACCTCGCGGTGGCTCTTGCGGAGAGNGGCGCGCTGGAGAAGTACGGCGTGGAGCTCATCGGGGCGAAGCTGGAGGCCATAAAGAAAGCAGAGGACAGGGAGCTCTTCAAACAGGCCATGAAGAACATTGGGATTAAGACCCCTCCTTCCGGCATTGGCACCACCCTCGAAGAGTGCCTGCGAATCGCCGGCGAAATTGAGTTTCCGTTGATCGTTAGGCCTGCTTTCACCCTGGGTGGAACCGGTGGTGGGATTGCTTATAACAGAGAAGATTTGGTGGAAATTTGCAAGGCCGGGTTGGCTGCTAGTTTGACTAACCAAGTGTTGATTGAGAAGTCCCTTTTGGGTTGGAAAGAGTATGAGCTTGAGGTTATGAGGGATTTGGCTGATAACGTTGTTATCATATGTTCCATTGAGAATATTGATCCTATGGGAGTTCATACTGGGGATTCTATCACTGTTGCCCCTGCGCAGACTCTGACGGATAAGGAGTATCAGCGTTTGAGGGATTACTCTATTGCTATAATAAGAGAAATTGGGGTGGAATGCGGGGGTTCCAATGTGCAGTTTGCTGTTAACCCGGAAAATGGTGAGGTCATGGTGATTGAGATGAACCCCAGAGTTTCGAGGTCTTCTGCTCTTGCCTCCAAGGCAACTGGGTTCCCAATTGCAAAAATGGCGGCTAAGTTGTCTGTGGGTTATACATTGGATCAAATCCCAAATGATATAACTAAAAAGACCCCTGCTAGTTTTGAGCCCTCTATAGATTATGTGGTCACAAAGATTCCTCGGTTTGCTTTTGAAAAGTTTCCTGGCTCACAGCCGATATTGACAACCCAGATGAAATCGGTTGGAGAGGCAATGGCAGTGGGGCGAACCTTCCAGGAGTCCTTTCAAAAAGCTGTGCGCTCTCTAGAATACGGCTACCCTGGATGGGGTTGTGCACACGTGAAGGAGTTGGACTATGACTGGGAACAATTGAAGTATAGCCTCCGAGTTCCTAATCCGGAGCGTATCCATGCCATATATGCTGCAATGAAGAAAGGGATGAAAATTGAAGAAATCTTTGAGCTGAGCTATATTGACCAATGGTTTCTCAGGCAGCTCGAGGAGCTAGTTGGTGTGGAAAGTTTCTTGCTGTCACATAACTTGTTCGATTTGACAGATGTCGATTTCTATGAGGTGAAGAGAAGAGGATTTAGTGATAAACAGATAGCATTTGCAACCAAGTCCACTGAGAAAGAAGTCCGAATTAGGCGACTATCTCTGGGTGTTGCTCCAGNGTATAAGCGAGTTGATACCTGCGCTGCAGAATTTGAAGCTAACACTCCTTACATGTATTCTTCTTATGATTTTGAGTGCGAATCGGCTCCCACTAAAAGAAAGAAGGTTTTAATTTTGGGCGGAGGACCAAATAGAATCGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGGAAGCAGGATATGAGACAATTATGGTGAACTCAAATCCTGAGACAGTCTCCACAGATTATGACACCAGTGATCGTCTCTACTTTGAACCCTTGACTGTTGAAGATATTTTGAACATTATTGATTTGGAAAGGCCTGATGGTATCATCGTACAATTTGGAGGTCAAACACCATTGAAGTTATCTCTCCCCATACAACAATANCTAGATGAACACAAGCCAGTGTGTGCTAGTGGGGATGGTCATGTGCGCATTTGGGGAACATCTCCTGATTCCATAGATGTTGCTGAGGACAGAGAGAGGTTCAATGTGATGCTTCATGAACTAAAGATTGAACACCCAAAAGGAGGAATCGCCAAGAGTGAAGCCAATGCACTTTCCATTGCAGCGGAAATTGGATACCCGGTTGTTGTTCGCCCTTCTTATGTTTTGGGTGGTCGAGCAATGGAGATCGTATATAGCGACGAAAAACTTGTGACTTACCTTGAAAATGCTGTTGAGGTGGATCCAGAACGCCCTGTACTAGTTGACAAGTATTTATCTGATGCCTGTGAGATTGATGTTGATGCACTGGCCGACTCACATGGCAATGTGGTAATTGGTGGGATAATGGAGCACATTGAACAGGCTGGGATACATTCTGGTGACTCTGCCTGCTCTATTCCCACAAGAACTGTTCCATCTTCTTGCTTGGAGACTATCAGGTCATGGACTGAAAAATTGGCCAAACAACTGAATGTATGTGGGCTCATGAATTGTCAGTATGCAATAACTTCATCGGGGGAGGTATTTTTGCTTGAGGCCAACCCTCGAGCTTCTCGTACTGTCCCATTTGTATCAAAAGCAATTGGCCGCCCCTTGGCTAAATATGCTTCCCTTGTCATGTCTGGAAAGTCTCTTTATGATATACAATTTACAAAAGAGGTTATTCCTAAACATGTGTCAGTCAAGGAAGCAGTTCTTCCTTTTTCAAAGTTCCCAGGCTGTGATATTTTTCTAAGTCCTGAGATGCGAAGTACTGGTGAGGTCATGGGTATTGATCCTATGTATAATATTGCATTTGCTAAGGCTCAAATTGCTGCTGGCCAGAAGTTACCACTTTCTGGTAATGTGTTCCTTAGCTTGAATGACTTAACAAAGCCTCACCTTGAGAAGATTGCAAAGGCTTTTACTGTGATCGGATTTGAGATTGTTGCTACTGCTGGAACAGCTCTCGCTCTTAAATTTTGTAATATCCCAGCTGTGCAAGTGCTGAAGCTGCATGAAGGGAGGCCTCATGCTGGTGACATGATAGCCAATGGAGACATTCAGCTGATGGTTGTAACCAGTTCAGATGATGCGCTTGATCGGATAGATGGTCTGGCTCTNAGAAGGATGGCTTTGGATTACAAGGTCCCTATTGTGACAACCGTTAATGGAGCTCTGGCAACTGCTGAAGCAATAAAGAGCATGAAGTCCAATTCTATCAAAATGATTGCTCTTCAGGACTTCATTGATGATGAACTTAAGCAGTGACAAATTCTGCAGACAATCTCCTTCTGAATCAGTTAGGTGATAGATACTAATTATTGTGAGTTTGTACAACTTGCTAGATTTGGGAGTGGCAGATGAATTTCTATGGAATGCTTTCATTTGTAGAGTGAAAATGACCAAAAGAATGGTCATATAATTTATGTCCTGACTCCTGAATCCTGATAGAGCACTCCTGATAAAAGCACTTGTGCTTGTGTATGTCTTTGGAGTATGGTGGATTTCTACTGCTTAATAATAATTTTCATTTTAA

Protein Sequence

>Glyur000066s00006260.1
MPMAYCISHFHKLPLLSFPSHSPRYSPKPLAGTTTTTFLHSCSYQLGKSRIRCCHKPPRDVSSSSASTAVATPAPEIASKVGKRTDLKKILILGAGPIVIGQACEFDYSGTQACKALKEEGXEVVLINSNPATIMTDPEMADRTYVTPMTPELVEQVLESERPDALLPTMGGQTALNLAVALAEXGALEKYGVELIGAKLEAIKKAEDRELFKQAMKNIGIKTPPSGIGTTLEECLRIAGEIEFPLIVRPAFTLGGTGGGIAYNREDLVEICKAGLAASLTNQVLIEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPENGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMAVGRTFQESFQKAVRSLEYGYPGWGCAHVKELDYDWEQLKYSLRVPNPERIHAIYAAMKKGMKIEEIFELSYIDQWFLRQLEELVGVESFLLSHNLFDLTDVDFYEVKRRGFSDKQIAFATKSTEKEVRIRRLSLGVAPXYKRVDTCAAEFEANTPYMYSSYDFECESAPTKRKKVLILGGGPNRIGQGIEFDYCCCHASFALQEAGYETIMVNSNPETVSTDYDTSDRLYFEPLTVEDILNIIDLERPDGIIVQFGGQTPLKLSLPIQQXLDEHKPVCASGDGHVRIWGTSPDSIDVAEDRERFNVMLHELKIEHPKGGIAKSEANALSIAAEIGYPVVVRPSYVLGGRAMEIVYSDEKLVTYLENAVEVDPERPVLVDKYLSDACEIDVDALADSHGNVVIGGIMEHIEQAGIHSGDSACSIPTRTVPSSCLETIRSWTEKLAKQLNVCGLMNCQYAITSSGEVFLLEANPRASRTVPFVSKAIGRPLAKYASLVMSGKSLYDIQFTKEVIPKHVSVKEAVLPFSKFPGCDIFLSPEMRSTGEVMGIDPMYNIAFAKAQIAAGQKLPLSGNVFLSLNDLTKPHLEKIAKAFTVIGFEIVATAGTALALKFCNIPAVQVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRIDGLALRRMALDYKVPIVTTVNGALATAEAIKSMKSNSIKMIALQDFIDDELKQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	360416	365633	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01955	carB, CPA2	EC:6.3.5.5	Pyrimidine metabolism	map00240
			Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process

GO:0006807 nitrogen compound metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006260.1	PF00289.17	CPSase_L_chain	87	203	5.70E-22
Glyur000066s00006260.1	PF02786.12	CPSase_L_D2	208	414	6.10E-73
Glyur000066s00006260.1	PF02787.14	CPSase_L_D3	504	626	1.40E-40
Glyur000066s00006260.1	PF00289.17	CPSase_L_chain	637	738	4.10E-19
Glyur000066s00006260.1	PF02786.12	CPSase_L_D2	765	967	9.10E-36
Glyur000066s00006260.1	PF02142.17	MGS	1050	1136	3.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.438
SRR1783600	control	38.401
SRR1783602	moderate drought stress	40.682
SRR1811619	moderate drought stress	40.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.009
DRR006520	Root Summer glycyrrhizin high producing strain	30.957
DRR006521	Root Winter glycyrrhizin high producing strain	7.523
DRR006522	Root Winter glycyrrhizin high producing strain	7.401
DRR006523	Root Summer glycyrrhizin low producing strain	21.470
DRR006524	Root Summer glycyrrhizin low producing strain	21.463
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.108

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.502
SRR2868004	Drought Stress (root)	36.436
SRR2967015	Control (root)	33.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.494
SRR9715740	Leaf	6.363
SRR9715741	Leaf	6.426
SRR9715739	Root	30.033
SRR9715742	Root	56.011
SRR9715743	Root	51.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.534
SRR8749028	MeJA induced 9h	11.399
SRR8749029	MeJA induced 9h	5.365
SRR8749030	Uninduced	0.818
SRR8749031	Uninduced	0.351
SRR8749032	Uninduced	0.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.003
SRR8400027	Control - Root	62.573