Gene detail

Gene detail information of Glyur000066s00006248.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45260.1	2.00E-80	C2H2-like zinc finger protein
NR	XP_003540171.1	2.43E-158	PREDICTED: zinc finger protein JACKDAW-like [Glycine max]
Swissprot	tr\|Q944L3\|IDD9_ARATH	4.00E-106	Protein indeterminate-domain 9 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|K7LVG2\|K7LVG2_SOYBN	9.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29370.2}

Sequence

Transcript Sequence

>Glyur000066s00006248.1
GGAGAAGCAATGCTCCATCAGTCTAACTTACACATACACGAAGGTCGGAACCAATGCATGTGCTGAGTCTAACACCANTTCAACAACGGTACGAACTGCACCTTAGACTTAGTAGCTCACATTTAATTGACTTGGTTACATAGAATTACACTGTTACTTGATTAGCTAGCTATATTAGTTATAAAGTACTATTGGGTATATATGGAGCGAGAAAGAAAGTGAGATAAAGAGAGAGAAAGAGAGAGAGAGAGAGTGGTCCAGCTTAGTCTATGGCTGACTGACACCCACAGCAGCCGTGTTGTTGATAAGGAGAGAAACAAAAGAAGAAATATCCAGCGGGCAACAACTTCTTCTCCTAAGTCTCTCCTTAATTGATTCATCATCAATTCAATTCTCTAGCTCAAGGCTATCTTGTTCTGTCACCGCGATTCACATTAGCTAGAGCCTCCGTTGTCCGCTTCAAAACTTTTGAGACAGTACTTTCGGAATTCGCTAGTTTAGGACGACACATGGATTTTTCTTCGGTTCCAAAGATGATGATGTCTGAAGAAGCAGTTTGTGTTAATCCTTCCAGTTCCAACCCCAGAGGCGCCTCAACCTCAAACTCAAACCCTAATCCTAATAACCCTAATTCAAACTCGGTCAACAAGAGAAAAAGAAGTCTACCCGGAACACCAGATCCGAATGCGGAAGTGATAGCTCTGTCGCCAAAGTCACTGATGGCAACGAACCGTTTCATGTGCGAAGTGTGCGGCAAGGGGTTTCAGAGGGACCAGAACCTGCAACTGCATCGGAGGGGGCACAACTTGCCGTGGAAGCTGAAGCAGAGAGCGAGCGGGGAAGTGGTGAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGTTGCGTGCACAACGACCCTAGCAGGGCACTGGGGGACCTGACGGGGATAAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCTGACTGGAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCTTAACGCACAGAGCCTTTTGTGACGCCTTGGCGGAACGTAGTGCGAGGATAGCTTCATCGGTTCCAGCGGTTTTCTCCAACTATGGAAACAACAATCTAATGATGAACGCTCATCAGGCACCGCAGAGTCTACTTGGGTTTAATCCAGAATTTGGTGGGCCAGGCGCACAACAACAACAACAACCATTAATGGGAAATTTTGCGGATGCAGACCATAGCCAAAAGCTGATGAGGCTTCCTCTATGGCTAGACCACCACCAGCAAGCCAATAATATGAATCCTCCTCTTAGCAACAACTCCAGTGGACAGTGGGGGAATTGCCGATACCCAGAAGCATCATTCATCACAAGTAGTAGTGGGGCTCTACCTATGCCACCTGTCATATTGCCACAAGGAGTAATGAAGCTAGAACCACAAGAAAACAAAGTGGACTTGTCACATAGCGTAACCTCTTTGTACCCACAAGAAGGCTTAGCAGGCATAGCTCACATGTCAATGGAATCCACGAGGATCAATGGTAACAATGTCTTTGGCAGCAACAACGTAGTTGAGATTCAGAAGTTGTTCAAGCAAGCAAATATTCAAGCTGGAAACTTCANTGATATGGTGAATAATTCCCAAGCAAGTAGCAGTGCCAACGTTGGGGAGTGGCAAAGTCCTCCTCCACAACCACAAATGATGGAGAATAAGCAAGTACATTATTGTAGCAGTTCGAATAATGAAGACTTAACCAGAGACTTCCTTGGTGTTGGAGATCATGAGGAGTCATTGAACAGGTCACCCTTCTTGCTGTTCAATCCAATAGGGCCAGCCATGAACCTGCAAACCCAGTTCGGTGGACACTACTGATCCAGTTGTACTTGCAGCAATATAATTATATATATATATATATATATATATGGATCGGAGTAGCTTTAGAGTTAAACCCGTGAACGTGAAGTTGTAAGATATCATATTCATACATAGCTACCAGCAGCAGATAAACACTAGTCGATCATGATGATAACAAGGAGCTAATTAGTTTGGTTTGCTAGCGAGCAAGGGACTCGGATTCGGAGGCATGCACAGTGAAACAGTCACGTGATATCAATACGATAAACATCTCGTGAGGGAGGTGGGGGCCATTGCATTTTGGAATAATTAGAGACAGACAATTTAAATATACATTATTTCTCTCCTTTCCTATTTCTATACTTGCTGTATACTGTTAAGTTTAAAATTACACACTTTTTCTTCATCGAATTATCTCTTCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	252723	255982	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	74.518
SRR1783600	control	74.882
SRR1783602	moderate drought stress	104.488
SRR1811619	moderate drought stress	103.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.697
DRR006520	Root Summer glycyrrhizin high producing strain	43.176
DRR006521	Root Winter glycyrrhizin high producing strain	87.687
DRR006522	Root Winter glycyrrhizin high producing strain	86.443
DRR006523	Root Summer glycyrrhizin low producing strain	38.906
DRR006524	Root Summer glycyrrhizin low producing strain	39.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	52.008
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.058

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.838
SRR2868004	Drought Stress (root)	2.157
SRR2967015	Control (root)	3.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.956
SRR9715740	Leaf	30.089
SRR9715741	Leaf	27.404
SRR9715739	Root	6.773
SRR9715742	Root	25.632
SRR9715743	Root	21.344

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.583
SRR8749028	MeJA induced 9h	0.165
SRR8749029	MeJA induced 9h	1.014
SRR8749030	Uninduced	0.216
SRR8749031	Uninduced	0.406
SRR8749032	Uninduced	1.811

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.579
SRR8400027	Control - Root	35.958