Gene detail

Gene detail information of Glyur000066s00006245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03170.1	4.00E-32	FASCICLIN-like arabinogalactan-protein 11
NR	XP_003539114.1	8.85E-111	PREDICTED: fasciclin-like arabinogalactan protein 12-like [Glycine max]
COG	YP_007098012.1	2.00E-06	secreted/surface protein with fasciclin-like repeats [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q8LEJ6\|FLA11_ARATH	1.00E-48	Fasciclin-like arabinogalactan protein 11 (Precursor)
trEMBL	tr\|I1LKE5\|I1LKE5_SOYBN	3.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G15990.1}

Sequence

Transcript Sequence

>Glyur000066s00006245.1
ATGTCGTCTGGGGTGGAGTCGGATTCGGAGGACTCTGGCGATGTGGGGACTAATGGCTTTGATGATGTTGGTGCTCCTGCTGCTGCCTTTGGTGCTGGGGCAACCTTTGGTGGGGCCTTTTTAGGGGCTGCTGCAGGTGCTAGTGCTGCTGCTGCTTCTGCTGTGTTGGAAGAATACAGAGAGGAAAACATGATGAGCAGGAGGAGGAGTGAGATGGAAAAGAGACCTTGCTTCATCTTCGCCCTTGGTAATTGGAGGCTAAGCAAATTGGCTTTAACCTTGATGTTTCTTGGAGTATTCTTACAATCTCAGACACTGTCCCCAGTTCAGCCTCCACAAACNTCTCCTCCAATCCCAACACAGCCACAATCACCTGCAGCTACTCCACCAGCGGGAATCAACNCAGTTCCTCTAGTACCCGTGTCACCCAATGGGGCCCCTACACCAACCACCACGACCATCCCAAAACCCCCAACCATTGACATTATCCAAATCCTCAAGAAGGCAAAGAGATTCTCTGTTCTCATCCGTCTCCTAAAAACCACCCAATTAATCAACCAACTCAACTCACAGCTCGTGACTTCAGGCTCTTCAGGGTTAACCCTTTTCGCCCCGGAAGACAGTGCCTTCTCCAAGCTAAAAGCAGGGTTCCTCAACTCCCTCGGTGACAGCCAAAAGGTGGAGCTTTTACAGTTCCACACACTCTCTTCCTCCATTTCAATTTCCAATTTCGATACTCTCACCAACCCGGTTCAGACCCAGGCCGGCGATGACCCCAAGAGGCTGCAATTGAACGTCACCACTTACGGTGGCAGCCNCGTCAGCATGACCACCGGCGCGGTTAACGCCACCGTCACGGGTACTGTGTATGCTGATAACAAGCTTGCGATTTATCAGGTGGACAGAGTGCTTCTTCCACTTGACTTCGTCCTTCCCAAGGCTAAGGCTCCGGCGCCGTCGCCGGCGAAAGGAGTTTCGCCCAAATCTGATGATAAGACCAAGTCATCGACGGAAGAAAGCAATAAAAATGATGACAATGGTGACGGTGCAGTTCCGGCCGTGGACAGTACTTCTGCGGGTTGCGTGAGTTTCGGGGTGGAGATCATCGTGTGGGTGCCTCTTGTTCTTGTTCTTGGAGCCACGATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	245686	247720	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006245.1	PF02469.17	Fasciclin	171	306	5.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.136
SRR1783600	control	46.935
SRR1783602	moderate drought stress	23.434
SRR1811619	moderate drought stress	24.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.413
DRR006520	Root Summer glycyrrhizin high producing strain	4.871
DRR006521	Root Winter glycyrrhizin high producing strain	2.597
DRR006522	Root Winter glycyrrhizin high producing strain	2.743
DRR006523	Root Summer glycyrrhizin low producing strain	2.065
DRR006524	Root Summer glycyrrhizin low producing strain	2.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.760
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.326
SRR2868004	Drought Stress (root)	39.396
SRR2967015	Control (root)	24.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.575
SRR9715740	Leaf	0.357
SRR9715741	Leaf	0.402
SRR9715739	Root	17.529
SRR9715742	Root	30.262
SRR9715743	Root	24.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.311
SRR8749028	MeJA induced 9h	0.733
SRR8749029	MeJA induced 9h	0.183
SRR8749030	Uninduced	1.300
SRR8749031	Uninduced	0.402
SRR8749032	Uninduced	0.137

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.527
SRR8400027	Control - Root	96.440