Gene detail information of Glyur000066s00006244 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 1.00E-33 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | AFK42840.1 | 9.26E-125 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 1.00E-47 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|G7IRP6|G7IRP6_MEDTR | 3.00E-125 | Uncharacterized protein {ECO:0000313|EMBL:AFK42840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 245028 | 245921 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006244.1 | PF02469.17 | Fasciclin | 88 | 222 | 2.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.760 |
| SRR1783600 | control | 67.827 |
| SRR1783602 | moderate drought stress | 62.723 |
| SRR1811619 | moderate drought stress | 59.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.252 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.408 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.930 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.313 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.055 |
| SRR2868004 | Drought Stress (root) | 116.660 |
| SRR2967015 | Control (root) | 71.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.464 |
| SRR9715740 | Leaf | 3.180 |
| SRR9715741 | Leaf | 1.159 |
| SRR9715739 | Root | 42.286 |
| SRR9715742 | Root | 134.216 |
| SRR9715743 | Root | 110.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.139 |
| SRR8749028 | MeJA induced 9h | 0.200 |
| SRR8749029 | MeJA induced 9h | 0.155 |
| SRR8749030 | Uninduced | 0.900 |
| SRR8749031 | Uninduced | 0.075 |
| SRR8749032 | Uninduced | 0.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 267.274 |
| SRR8400027 | Control - Root | 456.260 |