Gene detail information of Glyur000066s00006242 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03170.1 | 1.00E-38 | FASCICLIN-like arabinogalactan-protein 11 |
| NR | AES67461.2 | 3.40E-123 | fasciclin domain protein [Medicago truncatula] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-45 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|G7IRP5|G7IRP5_MEDTR | 1.00E-123 | Fasciclin domain protein {ECO:0000313|EMBL:AES67461.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 241844 | 242770 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006242.1 | PF02469.17 | Fasciclin | 82 | 216 | 9.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 92.259 |
| SRR1783600 | control | 97.015 |
| SRR1783602 | moderate drought stress | 155.572 |
| SRR1811619 | moderate drought stress | 155.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.585 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.157 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 145.571 |
| SRR2868004 | Drought Stress (root) | 260.089 |
| SRR2967015 | Control (root) | 181.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.036 |
| SRR9715740 | Leaf | 0.597 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 54.004 |
| SRR9715742 | Root | 114.572 |
| SRR9715743 | Root | 100.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 326.112 |
| SRR8400027 | Control - Root | 460.282 |