Gene detail information of Glyur000066s00006239 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 2.00E-34 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | AFK42840.1 | 4.80E-118 | unknown [Medicago truncatula] |
| COG | YP_007056329.1 | 8.00E-06 | secreted/surface protein with fasciclin-like repeats [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-48 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|G7IRP6|G7IRP6_MEDTR | 2.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:AFK42840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 237238 | 238408 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006239.1 | PF02469.17 | Fasciclin | 87 | 221 | 8.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.421 |
| SRR1783600 | control | 80.681 |
| SRR1783602 | moderate drought stress | 83.491 |
| SRR1811619 | moderate drought stress | 83.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.743 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.990 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.841 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.952 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.722 |
| SRR2868004 | Drought Stress (root) | 79.302 |
| SRR2967015 | Control (root) | 53.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.329 |
| SRR9715740 | Leaf | 0.813 |
| SRR9715741 | Leaf | 0.148 |
| SRR9715739 | Root | 23.651 |
| SRR9715742 | Root | 78.503 |
| SRR9715743 | Root | 64.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.330 |
| SRR8749028 | MeJA induced 9h | 0.040 |
| SRR8749029 | MeJA induced 9h | 0.638 |
| SRR8749030 | Uninduced | 1.008 |
| SRR8749031 | Uninduced | 0.218 |
| SRR8749032 | Uninduced | 0.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 112.174 |
| SRR8400027 | Control - Root | 194.365 |