Gene detail information of Glyur000066s00006237 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 3.00E-39 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | ACJ85480.1 | 2.17E-113 | unknown [Medicago truncatula] |
| COG | NP_923952.1 | 9.00E-06 | hypothetical protein glr1006 [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 1.00E-66 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|B7FL46|B7FL46_MEDTR | 8.00E-114 | Uncharacterized protein {ECO:0000313|EMBL:AFK37930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 231580 | 232332 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006237.1 | PF02469.17 | Fasciclin | 52 | 185 | 7.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.141 |
| SRR1783600 | control | 21.268 |
| SRR1783602 | moderate drought stress | 6.235 |
| SRR1811619 | moderate drought stress | 6.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.971 |
| SRR2868004 | Drought Stress (root) | 27.730 |
| SRR2967015 | Control (root) | 26.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.446 |
| SRR9715740 | Leaf | 1.881 |
| SRR9715741 | Leaf | 3.462 |
| SRR9715739 | Root | 25.159 |
| SRR9715742 | Root | 12.118 |
| SRR9715743 | Root | 14.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 74.733 |
| SRR8400027 | Control - Root | 206.477 |