Gene detail

Gene detail information of Glyur000066s00006236.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28470.1	0	beta-galactosidase 8
NR	XP_004487127.1	0	PREDICTED: beta-galactosidase 8-like [Cicer arietinum]
COG	YP_003380010.1	2.00E-52	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9SCV4\|BGAL8_ARATH	0	Beta-galactosidase 8 (Precursor)
trEMBL	tr\|I1M4L7\|I1M4L7_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000066s00006236.1
GTCACATTGCTTTCGCGAGCCATACCTTCGATTAATCATTGCTACTCCGTACACCATATGATATCCCACATTCCCACTCTCACTTCCCACTTTCCATTATTCACCGCCCTTGTTTCCAGTATAATGGCATGGGTCACAAAAATTGAAGAAGAAAAAATGACCCCATTTTCAGAACCAAAAATACTAAATAATATGCACCCAAAAAAAAAACACAGGCTGAGTGAACTCAAGAAGACAGCAGAGGAAGCGACGATGTCACCGACAACCTTTTCCTTTGTCAACATATTGACACACACAGCTGACAGCTGGCGTGTCCTTCTCCCTATAGAGTGCACCTTAGCTCTTTCTCTTTACTCTTCTCCTCCCATTTTATTCCCTTCCCTTCCCTCTCTTCCAAGTTTTACGATCCACATTTTAACTTCAACTGGACAACCACTTTTACTTCCATTACTATCTGTTCACAAAGCAACGTCACTTACATTTCACACGCACGTGAAACACAGACACATGTAAAAAGCAAATCATTCCACCCCATAGTTTTTTTTTTCCGCCATTTTGATTCAGGAAAAAAAAAGTGCATTCCTTCCCTTGTGGGTTGTTTTGGAGAAAGTAACCCCAGAAAAGGCCATGAGGGAGACCCAGATTGTGTTGGTTCTGCTTTGGTTCATCGGCATTTATGCCCCCACTGTGTTTTGCGCCAATGTGCAGTACGATCACAGAGCATTGGTCATCGATGGCAAGCGCAGGGTCTTGATCTCTGGTTCCATTCACTACCCTCGTAGTACTCCAGAGATGTGGCCAGACCTTATTCAAAAATCCAAAGATGGAGGACTTGATGTCATTGAGACCTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATGATTTTGATGGGAGGAAGGATTTGGTGAAATTTGTGAAGGCAGTGGCTGCAGCNGGTCTATATGTGCATCTCCGGATTGGTCCTTACGTGTGTGCTGAATGGAACTATGGTGGTTTCCCTCTTTGGCTGCACTTCATTCCAGGGATTAAGTTCCGAACTGACAATGAACCATTCAAGGCAGAAATGAAGCGATTCACTGCTAAGATAGTGGATCTGATGAAGCAAGATAAACTATATGCGTCACAGGGAGGACCTATAATTTTATCTCAGATTGAAAATGAGTATGGAAACATTGATTCGGCCTNTGGTTCTGCTGGGAAATCCTACATCAAGTGGGCAGCAACAATGGCTACATCTCTTGATACAGGGGTTCCCTGGGTCATGTGCCAGCAAGGAGATGCTCCTGATCCAATTATTAATACATGCAATGGATTTTACTGCGATCAATTCACACCAAACTCTAATACGAAGCCAAAAATGTGGACTGAGAATTGGACTGGATGGTTTCTTTCATTTGGTGGTGCTGTTCCTTACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGAGGTGGAACATTTCAAAATTACTATATGTACCACGGAGGGACCAACTTTGACCGAACTTCTGGTGGACCTTTCATTGCTACAAGTTATGATTATGATGCACCAATTGATGAGTATGGAGTTATTAGACAGCCTAAGTGGGGCCACCTTAAAGATGTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTAATAGCTACTGATCCAACAATTACATCTCTTGGTCCAAACCTAGAGGCTGCAGTTTACAGGACAGGGTCTGTATGTGCTGCCTTCCTTGCCAACGTTGGCACTAAATCTGATGTAACAGTAAATTTCAGTGGCAATTCATATCACTTGCCTGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTGCAATTTCAAGCTTCACAACTGAATCTTCAAGAGAANATATTGGTTCTTTAGAAGCTTCTAGTTCAAAATGGAGTTGGANAAGTGAACCAGTGGGTATTTCGAAGGCTGATTCATTCTCAAGAATTGGATTGCTGGAGCAAATAAACACGNCAGCTGATAGAAGTGACTACTTGTGGTACTCATTAAGCATTGATACTAAGGGTGACCCTGGTGCTCAAACTGTCCTTCACATTGAATCACTTGGTCATGCCCTTCATGCTTTCATCAATGGCAAGCTTGTAGGAAGTCAAGCAGGCAATAGTGGCAAAGCTAAGCTCAATGTGGACATCCCCGTTAAACTAGCNGCTGGAAAGAACAGAATTGATCTCCTGAGTTTAACCGTGGGACTTCAGAACTACGGAGCTTTTTTTGACACATGGGGAGCGGGGATCACTGGTCCAGTGATATTGAAAGGTTTGAGGAATGGCAAGAATCTTGATCTCTCCTCTCGGAAATGGACATATCAGGTTGGCCTCAAAGGTGAAGAATTAGGTCTGTCTAGTGGAAGTTCTGGAAGGTGGAATTCACAGTCTACCTTCCCTAAGAACCAACCATTGACTTGGTACAAGACAAACTTCGCTGCTCCATCCGGCAGCAATCCAGTTGTAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGGCGATACTGGCCTACTCATGCCTCTTCAAACGCTGGTTGCACGGACTCATGCAATTATAGAGGACCCTATAGCGCATCCAAATGTCGCAAGAATTGTGGGAAACCATCACAGACATTATACCACGTACCGCGATCATGGTTGAAACCAAATGGCAACACTCTTGTATTGTTTGAGGAAAGTGGCGGCGATCCAACACAGATATCATTTGCTACAAAGCAGATAGGAAGTTTGTGTGCACATGTATCTGAATCTCACCCACCTCCAGTAGACTTGTGGAACTCAGATTCAGAATCAGGAACAAAAGTAGGGCCTGTACTGTTGCTCAAGTGTCCTCATCATGATCAGGTCATCTCTTCAATCAAATTTGCAAGCTATGGAACACCCCTTGGGACCTGTGGGGACNTCTACCATGGACACTGCAGCAGCAATAAGGCTCTGTCCATTGTGAAAAAGGCCTGCATTGGATCAAGCAGTTGTAGTGTTGGAGTATCAAGTGATACATTTGGAGACCCTTGTAGAGGAGTGACAAAGAGTTTAGCTGTTGAAGCTACTTGTGCATAGAAGAAAGACATGTTTCTTCAAGAGCACCATAAGAAAGAGCACTCCCCCATTGTCTTCAGCTATACTTACTGCTTAGTCAAATTAGAATATTGTATTCTAGAAACATCCCGGATAAAATTGTCAATTAAAACGGTCTAGTATCACACTATCACTTGCAAGTTGCAATAAAAGAAAGAAAAGTCTAGTCCAGGCTGATGCAAGATACATGATAAAATGGTGTTTTGTTTCACTGAAAAAGATGGTCCCANACTTGTAAGACAAGTTGCACTACCCATGCGTTGATGTGAAAGAAGCTGGACATTTGACAAGTTGAAACTTTGGACTTTTGGAGTATGGACTTTCCCGCATGAGAGAAGTTGGATTGACGTAATTGTATGGGAAAATTTTACTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	221287	228446	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006236.1	PF01301.14	Glyco_hydro_35	33	337	4.70E-119
Glyur000066s00006236.1	PF02837.13	Glyco_hydro_2_N	468	569	8.20E-06
Glyur000066s00006236.1	PF02140.13	Gal_Lectin	762	839	1.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.125
SRR1783600	control	23.389
SRR1783602	moderate drought stress	13.412
SRR1811619	moderate drought stress	13.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.354
DRR006520	Root Summer glycyrrhizin high producing strain	11.292
DRR006521	Root Winter glycyrrhizin high producing strain	0.070
DRR006522	Root Winter glycyrrhizin high producing strain	0.088
DRR006523	Root Summer glycyrrhizin low producing strain	1.899
DRR006524	Root Summer glycyrrhizin low producing strain	1.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.444
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.255

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.850
SRR2868004	Drought Stress (root)	11.045
SRR2967015	Control (root)	12.556

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.006
SRR9715740	Leaf	0.552
SRR9715741	Leaf	1.397
SRR9715739	Root	3.866
SRR9715742	Root	9.893
SRR9715743	Root	8.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.539
SRR8749028	MeJA induced 9h	0.567
SRR8749029	MeJA induced 9h	0.755
SRR8749030	Uninduced	0.161
SRR8749031	Uninduced	0.037
SRR8749032	Uninduced	0.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.488
SRR8400027	Control - Root	36.773