Gene detail

Gene detail information of Glyur000066s00006232

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60570.1	3.00E-157	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003543480.1	0	PREDICTED: F-box/kelch-repeat protein At5g60570-like isoform X1 [Glycine max]
COG	YP_003393273.1	1.00E-11	Kelch repeat-containing protein [Conexibacter woesei DSM 14684]
Swissprot	tr\|Q9FKJ0\|FK132_ARATH	0	F-box/kelch-repeat protein At5g60570
trEMBL	tr\|I1M4L4\|I1M4L4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G40180.1}

Sequence

Transcript Sequence

>Glyur000066s00006232.1
ATGGATAGGATGGAAGGNGTGATGATGAATGGTGGTTTTTCTAGACCTGAGCCAAACGATTCGCTTCTCCCCGGTCTAATTGACGATGCTGCGATGAATTGTCTTGCCTGGGTCAGCGGATCCGATTATGCTTCGCTTTCNTGTATTAATAAAAGGTACAATAAGCTGATCAATAGTGGGTATCTATATGGGTTGAGGAAACAGTTGGGAGCTGTGGAGCATTTGGTTTATTTGGTTTGTGATCCAAGGGGATGGGTGGCATTTGACCCTAAGGTAAATAGATGGATGGCATTACCTAAGATACCTTGTGATGAGTGTTTCAACCATGCAGACAAGGAGTCCTTGGCTGTGGGTTGTGAACTTTTGGTTTTTGGTCGGGAATTGATGGAGTTCGCCATTTGGAAGTATAGCTTGATTTGCCGTGGTTGGGTGAAGTGTCAAGAGATGAACCAACCTCGCTGTTTGTTTGGATCTAGTAGTCTTGGTTCGATTGCTATTGTAGCCGGTGGAAGTGATAAATATGGAAATGTTCTCAAATCTGCTGAGTTGTATGACTCTTCATCAGGTACATGGGAGCTTTTGCCAAACATGCACACACCGCGTAGATTGTGCTCGGGTTTTTTTATGGATGGCAAATTCTACGTGATCGGTGGAATGTCGAGCACAACTGTTTCTTTAACTTGTGGGGAGGAATATGATCTCAAGACAAGAAATTGGCGGAAGATAGAGGGTATGTATCCATATGTTAATGTGGGTGCTCAAGCACCTCCACTTGTGGCAGTTGTGGACAACCAGTTGTATGCAGTTGAGCATCTGACTAACATGGTGAAGAAATATGACAAGGAAAAGAACACCTGGAATGAATTGGGAAGGCTTCCGGTGAGGGCCGATTCTTCTAATGGCTGGGGCCTTGCTTTCAAGGCTTGTGGAGAGAAACTTTTGGTTGTGGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATAGTGCTGAATTCATGGTGTCCTAAGTCAGGGGTCAGGAATGGCACCATAGATTGGCAGGTACTTGGTGTGAAGGAGCATGTTGGGGTGTTCGTGTATAATTGTGCCGTTATGGGCTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	200714	201814	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006232.1	PF01344.20	Kelch_1	152	197	4.10E-08
Glyur000066s00006232.1	PF01344.20	Kelch_1	200	245	6.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.730
SRR1783600	control	18.044
SRR1783602	moderate drought stress	15.774
SRR1811619	moderate drought stress	16.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.821
DRR006520	Root Summer glycyrrhizin high producing strain	23.713
DRR006521	Root Winter glycyrrhizin high producing strain	48.892
DRR006522	Root Winter glycyrrhizin high producing strain	47.583
DRR006523	Root Summer glycyrrhizin low producing strain	34.007
DRR006524	Root Summer glycyrrhizin low producing strain	33.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.236
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.260
SRR2868004	Drought Stress (root)	111.561
SRR2967015	Control (root)	115.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.833
SRR9715740	Leaf	66.080
SRR9715741	Leaf	95.302
SRR9715739	Root	26.312
SRR9715742	Root	52.702
SRR9715743	Root	54.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.926
SRR8749028	MeJA induced 9h	170.571
SRR8749029	MeJA induced 9h	57.665
SRR8749030	Uninduced	301.307
SRR8749031	Uninduced	218.381
SRR8749032	Uninduced	141.757

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.953
SRR8400027	Control - Root	48.219