Gene detail information of Glyur000066s00006231 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60580.3 | 9.00E-107 | RING/U-box superfamily protein |
| NR | XP_004487122.1 | 0 | PREDICTED: uncharacterized protein LOC101488558 isoform X2 [Cicer arietinum] |
| trEMBL | tr|G7IRR0|G7IRR0_MEDTR | 0 | RING/U-box protein {ECO:0000313|EMBL:AES67476.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 190077 | 193883 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006231.1 | PF12906.2 | RINGv | 248 | 295 | 4.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.985 |
| SRR1783600 | control | 0.964 |
| SRR1783602 | moderate drought stress | 0.661 |
| SRR1811619 | moderate drought stress | 0.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.962 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.331 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.753 |
| SRR2868004 | Drought Stress (root) | 14.638 |
| SRR2967015 | Control (root) | 17.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.303 |
| SRR9715740 | Leaf | 4.893 |
| SRR9715741 | Leaf | 3.342 |
| SRR9715739 | Root | 0.553 |
| SRR9715742 | Root | 2.668 |
| SRR9715743 | Root | 2.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.263 |
| SRR8749028 | MeJA induced 9h | 64.337 |
| SRR8749029 | MeJA induced 9h | 41.005 |
| SRR8749030 | Uninduced | 13.728 |
| SRR8749031 | Uninduced | 4.608 |
| SRR8749032 | Uninduced | 10.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.978 |
| SRR8400027 | Control - Root | 6.241 |