Gene detail

Gene detail information of Glyur000066s00006225

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37170.1	1.00E-131	plasma membrane intrinsic protein 2
NR	XP_003540176.1	0	PREDICTED: aquaporin PIP2-7 [Glycine max]
COG	YP_007128969.1	1.00E-33	Aquaporin Z [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9ATM4\|PIP27_MAIZE	0	Aquaporin PIP2-7
trEMBL	tr\|C6TBC3\|C6TBC3_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19125.1}

Sequence

Transcript Sequence

>Glyur000066s00006225.1
CACAAACAAACAAAAACAAAAACAAAAAAAAAAACTTAGCAATTAATTAAAATTTGATTGGTTTGAATACTCTGTTTTTCTTCCTCACTCTCATCCCTTAAATACCATCTTTCCANTCACCCTCCAATCCACAAAAATATAGGTACACAGCAAAACAAGCAAGTAGCTAGCACACACATAACTCTCAGTCTCTTGCATAGAGCTAGAACGATCCGAGAGAAAGAATGGGTAAAGACGTTGAGGTTGCAGAGCAACAACAAGGGGAGTACTCCGCAAAGGACTACCATGACCCACCCCCAACACCTTTGTTCGACCCAGAGGAGCTTACGAAGTGGTCTCTGTACAGAGCCGTGATAGCAGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACCGTGTTGACCATCATTGGCTACAGNAGACAGAGTGACACCACAATCGAAGGCAACACCGAGTGTGACGGCGTTGGAGTTTTGGGCATCGCTTGGGCTTTTGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCGGCGGTGACGTTTGGGCTGTTTTTGGGGCGAAAGGTGTCGCTTGTGAGGGCGTTGCTGTACATGATAGCACAGTGTTTGGGTGCAATCTGCGGTGCTGGACTTGCCAAGGGCTTCCAGAAATCATACTACAACAGGTATNACGGTGGGGTGAACATGGTGTCCGAGGGCTACAACAAAGGCACCGCTTTGGGTGCTGAGATCATCGGCACCTTCGTTCTAGTCTACACCGTCTTCTCTGCCACCGATCCCAAGAGAAACGCCAGGGATTCCCATGTTCCCGTGTTGGCTCCACTTCCAATTGGGTTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCTGTTACCGGTACCGGAATTAACCCTGCCAGGAGTTTTGGACCAGCTGTTATCTTCAACAACGAGAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCATTTATTGGTGCTGCGGTGGCTGCATTCTACCACCAACACATTCTTAGAGCAGCAGCCATAAAAGCTCTTGGATCCTTCAGGAGCAACGCTTGATCATCGCCTCAATATATTATTATTATGGCTCGTCGATCCTTTGGTGGGGCTGTGTCCCGAAAGAATAACAGTTCCATATTGAGTAGTTAAAGTCTGTCTACGGGTCCCTCTTGGAGTTTTGGCCTCTTGCTTCCCAATTAAATACTCGGCTGTGCTGTGTGTGTTTTTGGAGGAAGGACAAGCCAAAATACCATTGGNGTCCTCAAATTGTAGATAAGCATGCTTATGTCTAAGGGTGTATTTTGTATCCCTTTTTTTATCTTGTGTCCTTTCTTTCTTTTTTTACCTTAAGTTNTTCCTCGTGTGTTCTCGCTTTAATTTAATGTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	164098	165944	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006225.1	PF00230.15	MIP	33	269	8.60E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	281.802
SRR1783600	control	280.472
SRR1783602	moderate drought stress	428.589
SRR1811619	moderate drought stress	427.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	205.121
DRR006520	Root Summer glycyrrhizin high producing strain	202.937
DRR006521	Root Winter glycyrrhizin high producing strain	802.585
DRR006522	Root Winter glycyrrhizin high producing strain	782.008
DRR006523	Root Summer glycyrrhizin low producing strain	200.728
DRR006524	Root Summer glycyrrhizin low producing strain	200.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	101.035
DRR006526	Leaf Summer glycyrrhizin high producing strain	100.056

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2959.211
SRR2868004	Drought Stress (root)	4188.772
SRR2967015	Control (root)	2546.837

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	782.324
SRR9715740	Leaf	681.123
SRR9715741	Leaf	1021.445
SRR9715739	Root	959.905
SRR9715742	Root	638.902
SRR9715743	Root	688.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	292.009
SRR8749028	MeJA induced 9h	730.119
SRR8749029	MeJA induced 9h	456.160
SRR8749030	Uninduced	251.467
SRR8749031	Uninduced	65.272
SRR8749032	Uninduced	207.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	971.254
SRR8400027	Control - Root	615.462