Gene detail information of Glyur000066s00006223 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37190.1 | 3.00E-83 | Ribosomal protein L11 family protein |
| NR | XP_010920408.1 | 5.33E-110 | PREDICTED: 60S ribosomal protein L12 [Elaeis guineensis] |
| COG | NP_069374.1 | 2.00E-24 | 50S ribosomal protein L11P [Archaeoglobus fulgidus DSM 4304] |
| Swissprot | tr|O50003|RL12_PRUAR | 1.00E-107 | 60S ribosomal protein L12 |
| trEMBL | tr|A5C9G0|A5C9G0_VITVI | 5.00E-110 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN75443.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 156943 | 157557 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006223.1 | PF03946.9 | Ribosomal_L11_N | 13 | 70 | 5.50E-16 |
| Glyur000066s00006223.1 | PF00298.14 | Ribosomal_L11 | 75 | 144 | 4.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.922 |
| SRR1783600 | control | 15.266 |
| SRR1783602 | moderate drought stress | 11.619 |
| SRR1811619 | moderate drought stress | 11.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.880 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 71.806 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.372 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.928 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.276 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 127.915 |
| SRR2868004 | Drought Stress (root) | 66.665 |
| SRR2967015 | Control (root) | 54.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.412 |
| SRR9715740 | Leaf | 51.546 |
| SRR9715741 | Leaf | 49.902 |
| SRR9715739 | Root | 132.494 |
| SRR9715742 | Root | 93.835 |
| SRR9715743 | Root | 87.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.758 |
| SRR8749028 | MeJA induced 9h | 44.522 |
| SRR8749029 | MeJA induced 9h | 48.792 |
| SRR8749030 | Uninduced | 15.564 |
| SRR8749031 | Uninduced | 3.309 |
| SRR8749032 | Uninduced | 20.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.024 |
| SRR8400027 | Control - Root | 60.993 |