Gene detail

Gene detail information of Glyur000066s00006213.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
NR	DAA05766.1	TPA: TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus]
Swissprot	tr\|Q9SE43\|REV_ARATH	Homeobox-leucine zipper protein REVOLUTA
trEMBL	tr\|Q147T3\|Q147T3_LOTJA	Class III HD-Zip protein REV1 {ECO:0000313\|EMBL:DAA05766.1}

Sequence

Transcript Sequence

>Glyur000066s00006213.1
TATGCGTGCAGTGCAAACCTCTCTCTCACTCTCTCTATCCCCCTCACTCACTTTATTCCCACTGTTTCAGCTCAAATCACTGTCTCAATTCTCAAATCAAACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATATCAATATTTTCCCTGAAATCCGTTTGAATTGGATTGGATCCCCGTTGATGTATGAATATGAATATGCTCCAGGGTTCCTTCATTGTTGCCTCTTGCAACAGTAGTAGCAGCTAGCTAACTCCATGCCATGCTATGCTCCACAACTTCACTTTCCCCGAGAAAGTGAGCCGCACCGAAACTACCTCTATTCGTTCCTTCTTCCTCAAGCTCCATTCACAACTACTCCCTAACTTCAAGCTGCTGCTTTTTTCTTTCTTCCTTTCATTTGCGGTGGAATCTGGTTGAAAAGGAAAAGCTCTTAAGTTGTAGCTAGAGCGAAGAGGGGTCGGTTCAAAGTTCAAACTTTGAAAGGAGAGGGTATCTATTTTTATGGCTTTCACATTGGGCTTTTGCCCAAAGAAAAGAAAAACACGTAAATTGAGGAGGCTCGAAGCTTAGTAGTTAGAAGAGAAGAACTAAGTCGGTAGTAGTGTTGGGGGAGGGGTGTTTCGGTTTTTTTGGGGAGAGAAGAGAAGAGAAGAGAAGAGAAGACAAATTCCGGTTTCTGTGGGAAATCAAACAAACTGTCGCCGCTAGTGGTTTTGTTGAAAGCAGGAAGAAAAAAAAGAATAAGAAAAAGAAACGGTTTNTGAGGTTGTAAGAACGAGGATTTCCTGTTTCAGTTTTGGAACTATTCGGGTTTGGGGGGTTGCAAAGGGGAGTTTCGTTTCGTTTCACTTCTGAGTTCTGAGCTAGCTGGTTTAGTAACACTGACACAACACAACAAAATTACACAACACCACTCTGAGCTAGCAATAACGGAGTTTCACTTTTTGGTCACGAAGAAGAAGAAGAAAAAAGCTTGTAACTTGAGAGCTGAGGTTTTGGTTCTGAGCTTTTGGAGAACGAAGATGGCCATGGCTGTTGTTCCACACAGAGAAAGCAGCATTGACAAGCACCTTGATTCTTCTGGGAAATACGTGCGCTACACCGCGGAACAGGTTGAGGCTCTGGAACGGGTTTACATAGAGTGCCCCAAGCCCAGTTCATTGCGGAGGCAACAGCTGATTCGAGAGTGCCCCGTTCTCGCCAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGTCTTCTCGGCTTCAGACTGTGAACCGGAAACTGAATGCAATGAACAAGTTGTTGATGGAGGAAAATGAGCGGTTGCAGAAACAGGTGTCACAGCTGGTATGCGAGAATGGGTCTATGCGGCAGCAATTGCATACTGTGTCAGCAGCTGCAGCTACTGATGGCAGTGGTGATTCTGTGGTTACTACTACTCCTCGGAATTCTTCCATGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTTAGTTTAGAACCTATGAAGATTGTGGAGATCCTAAAAGATCGTCCATCTTGGTATCGGGATTGTCGAAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCATTGACGCTGGCTCCTGCCCGGGATTTCTGGACTATAAGATACACTACAACTTTGGACAATGGCAGTGTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCTGGTGCTGGGCCTAATGCTGCCGCCGCCACACAGTTTGNNAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTAGAGGCATGGAGTGTGCCAGAAGTGCTTCGACCACTTTATGAATCATCAAAAATGATAGCTCAAAGAATGACAATTGCAGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGCCTGGGTAGGCAACCTGCTGTTCTGAGAACTTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTAGTGAACTGTGATGGTGCTGAGGATGTTATTATTGCAGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTACACTCCTTGGAGGAATTATGTGTGCAAAAGCTTCCATGTTACTCCAAAACATCCCTCCTGCAGTTTTAGTTCGCTTTCTGAGGGAACATCGCTCAGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCTGGCTCCTATGCCTATCCAGGAATGAGGCCTATGAGGTTCACTGGCAGTCAAATAATGATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAGTTATCCGCCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGTTATGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCCCCATTGGTGCCTTCTGGTTTCCGCATTATCCCGTTGGATTCACAACCAGGTGATAAAAAGGACACTTTGACAACAAATCGGACCTTGGATTTGACATCTGGTCTTGAAGTAGGCCCAGCAACAAATCATACTGCTGGAGTTGCATCACCATGTCATAACAATCGATCNGTATTGACTATTGCCTTCCAGTTTCCTTTTGAGAGCAGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGTAGTGTAATTTCCTCCGTGCAGACAGTTGCCATGGCTATATCTCCGGCTGGTGTAAACCCGGCTGTTGGAGCAAAACTCTCTGCCGGCTCTCCAGAAGCTCTTACACTAGCTCAATGGATCTGCCAGAGTTATAGGCAAGATGCTATTTTATGCTGTTCTGTGAAGTCAGTGCCGGTGTTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCGCGTTGGATAAAATATTTGATGAGTCCGGACGGAAGGCGTTGTTTGCAGATTTTGCNAAGTTAATGCAGCAGGGATTTGCTTATCTGCCAGCTGGGATCTGCATGTCAACAATGGGGAGGCATGTTTCATATGAGCAAGCCATCGCATGGAAAGTGCTTGCTGAAGATAACAGTGTTCATTGCTTGGCTTTCTCTTTCATAAATTGGTCATTTGTATGAAGAATCCTATTCCAGTATTTAAAGCCCTGCTTTTGTTCCCACTTGAATATACAAGAACAAGGGTGTAAAAACAAGAGAAAATTTTTGAGAGGGAAGAAGAAATCAGAATTTTTTGTTCATATATATTATATACATCATATAAGATCAGGTTTGCATCATTCGATTTAATTTTCTTATTTGGTGCAGAGACCAAATTGATTTAATCTTGTAAATTTTTGTTAGTGCTAGAATCATGTGTTTGGAGACTTGTGACTGACTCCATATCATACATCCATACTACCTACCATTGTTTTTATATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	109986	117303	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006213.1	PF00046.24	Homeobox	22	80	1.50E-15
Glyur000066s00006213.1	PF01852.14	START	164	369	3.20E-44
Glyur000066s00006213.1	PF08670.6	MEKHLA	710	817	8.90E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.773
SRR1783600	control	4.846
SRR1783602	moderate drought stress	6.102
SRR1811619	moderate drought stress	5.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.914
DRR006520	Root Summer glycyrrhizin high producing strain	13.994
DRR006521	Root Winter glycyrrhizin high producing strain	11.914
DRR006522	Root Winter glycyrrhizin high producing strain	11.503
DRR006523	Root Summer glycyrrhizin low producing strain	9.974
DRR006524	Root Summer glycyrrhizin low producing strain	9.583
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.546
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.667

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.227
SRR2868004	Drought Stress (root)	32.464
SRR2967015	Control (root)	31.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.879
SRR9715740	Leaf	5.641
SRR9715741	Leaf	6.157
SRR9715739	Root	3.027
SRR9715742	Root	19.731
SRR9715743	Root	15.853

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.511
SRR8749028	MeJA induced 9h	21.632
SRR8749029	MeJA induced 9h	13.788
SRR8749030	Uninduced	3.791
SRR8749031	Uninduced	0.774
SRR8749032	Uninduced	2.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.329
SRR8400027	Control - Root	23.871