Gene detail

Gene detail information of Glyur000066s00006209

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G28350.1	auxin response factor 10
NR	XP_003597256.1	Auxin response factor [Medicago truncatula]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|G7IRU1\|G7IRU1_MEDTR	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000066s00006209.1
GTCTTGTGTTGTGTCCCCGTGTGTGTGTGTGGAAGAGAAAAAAGTTGTCCCTTTCTTTCCCTTCTTTCTCTGAGATCTGAGAGAAACCAAAAGATAAGAGGAAAAAGAAGAGAGAAGAAAAAAAAAATCAGCTGAGAAAGTTGAGGTCTTTGCNTGATGGAGCTTGTGACCCCTGTTGGTGGAGTGGAGGTTCTGCAGAAACGAAGGCGGCTTTGTTATGATTGAGTGAANCAGAAGAAAAACCAATTGACAAAGTAGAATTCAGCAAAAACTTGATGGGGTTTGAAAACTGAACGGGCAATCCAAACTGTTCTCTGGGGCGTTAAAGTTTCAGTCTTTCCTTTGTGGGGTTGGAAGATTCGCGCTGTGGAACTAAGGAAGCAGAGCAAGCAATCCCAATTTTCTACGNCACATTTTCACTCTCCTAGCATTCACTGAAGATAGAGAACCATCAACACAAAAAAAAAAAACTTGTGTTCTGCCTGCCACTGTTCGATCACTTTGCTCTGTGCTGCCACAACAACCAAAAAGCAATGAAGGAAGCTGAGAGTAGCTTGGATCCACAGCTATGGCATGCATGCGCCGGAGGAATGGTTCAAATGCCTCCGGTTAACTCCAAAGTCTTCTACTTTCCACAAGGGCACGCGGAACACGCACAGTCCAATGTTGATTTCGGAGCTTCCCTGAGAATTCCACCACTCATCCTCTGCCGCGTGGCTGCTGTGAAATTCCTAGCCGACCCAGAAACCGACGAAGTCTATGCAAGGATAAGGTTGATTCCACTGAGTAATTCAGAGCTTGATTACGAAGACAATGATGCTGTTGATGGTAATGGGTCAGAGAGTTCTGAAAAGCCCGCGTCTTTCGCCAAGACGTTAACTCAGTCCGATGCCAACAACGGTGGAGGGTTCTCTGTTCCGAGGTATTGTGCAGAAACCATCTTTCCCCGTTTGGATTACTCGGCGGAACCGCCGGTTCAGACGGTGATAGCAAAGGACGTTCACGGCGAGGTTTGGAAGTTTAGGCACATATATAGGGGCACGCCACGTAGGCACTTGCTGACAACCGGGTGGAGCAGTTTCGTGAACCAGAAAAAACTGGTTGCTGGGGATTCCNTCGTGTTTCTGAGGGCTGAGAATGGTGATCTCTGTGTTGGGATCCGTAGAGCCAAGAGGGGAATCGGTTGTGGGCCAGAAGCGGCGCCTTCCGGGTGGAGCTCCGGTGCCTGCGGCGGCGGCACCACCACTGGAAGTTGTGGTCTTGGGGTTGGGCCTTATGGGGCCTTTTCTGTTTTCCTGAGAGAGGAGAGCAAGGTGTTGAGAAATGGTGGTTGTGGGAACTCAAATTCTGTTCCTGGTGGTGGTAATAATCTTCTGGGTGGAAGAGCAAAAGTGAGTGGTGAATCTGTGAGGGAGGCTATGACACTTGCTGCTAGCAATCAACCGTTTGAGGTTGTTTATTACCCGAGAGCTAGCACCCCAGAGTTTTGCATCAAGACTTCAGCTGTGAGGGCTGCTATGAGGATTCAATGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAAACTGAGGACTCTTCCAGGATCAGCTGGTTCATGGGCACCATTGCTTCTGTTCAGGTTGTCGACCCTATCCGTTGGCCNAATTCCCCTTGGCGACTTCTTCAGGTTACATGGGATGAGCCAGATTTGCTACACAATGTGAAGCGTGTGAGCCCATGGTTGGTTGAGTTGGTATCAAACATGTCAGTGATCCATCTCACACCCTTCTCTCCACCAAGGAAGAAGCTTCGTTTCCCACAACACCCAGACTTCCCCACCCTTGATGTTCAATTCCCATTTCCAACACCAACACCAACACCAACGTTTTCATCATCAGGCAACAACAANCCCCTTGGGCCCAATAACAGCCCCTTGTGTTGTGTATCTGATCATNATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTCTCAGATCTCCACCACCTCAACAACAAACTTCAGTTGGGGGTGCTTCCAACTACTAACATCCACCACCACCACACTGGGATTCCTAATGGCAACAACATAATAACCAAACATGATAATAACAATAGTAACAATAAGAGCAAAGAAAGTTTATCATGCTTGCTGACCATTGGAAATTCTCACAAGAGTTTGGAGAAATCTGATGATGTGAAGAGATCACACCAATTTTTGCTTTTTGGTCAACCGATACTCACTGAGCAACAGATCTCTAGAAGGGCTTCTTCTTCTTCTAGTGATGTGTTGTTGTGTTCTCAGAAAGATTCACCAGATCATGAGAGTGATAATAATAAGGAGAAAGAGATCAAGTGGTTTTTGAGTGACTCATATAAGTCTTCATCACTCTCAGGAAAGTCTTGTTCTACTACCGGTGAGTTTTGTTGGCAACTTGGGTTGGAAACCGGTCACTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGGAGGACCTTAGACCTGTCACGTCTTGGTTCTTATGAAGAGCTTTACAGGAGACTGGCCAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGTCATGTACTCTACCGTGACGCAACAGGTGCTGTNAAACAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACGATTCTGACGGATTCAGGAAGCAAAGATACTAGAAGGGTGTGGATTACAGGAACTCGGANTGCTGAGCATGGATTGGATGCATCTAATAAGACAGGCCCTCTTAGCATATTTGCTTAATANATATGGTGTGGCATCTTCTGATGAAGGACATGATCTTATTTACTTGTTAAAGAGACCTTCAAATTCAATCAATATTGGTGTCTTGGTAGTTTTTCTGAATGTTGTAGAAAATCATGTTATTCCTGTATCATCATGGACAATTGCTATTCTACTTATTAACCAACATTTGGTTTCCATTAGAGACTATTNCATTTAGTTCAGGGGAAATTTGAGTATATGTTGTGTGGGCACNGACAGAAACAGTGGTCATCAGGTGAAGCCATGATCTGGAGCTAAAACATTTCTTACTTTGAAACCTTTGATTGGGTCTTGTGTATGCCATGTGTATCATTTTTCACTGTGGTTCACTGAATTATTCTCATTTTCACAATATTAAAAATATGTATAGTCAAAGTGAGAGATACAAGGAGTTTGGTTTTGGTTTTTCTTAAACAAGTCTTGGATTCTACAATGTGATTTCTTNTTTATTTTTGGATATTGAGGCCAAGGGTGTAGGCAAAAAATGTGAGACAAAATGATCAAACACATACCAAGAAATATCTTGCTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	82390	86726	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006209.1	PF02362.16	B3	111	212	8.10E-21
Glyur000066s00006209.1	PF06507.8	Auxin_resp	295	378	4.10E-34
Glyur000066s00006209.1	PF02309.11	AUX_IAA	555	718	5.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.161
SRR1783600	control	6.143
SRR1783602	moderate drought stress	5.062
SRR1811619	moderate drought stress	5.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.498
DRR006520	Root Summer glycyrrhizin high producing strain	3.599
DRR006521	Root Winter glycyrrhizin high producing strain	16.917
DRR006522	Root Winter glycyrrhizin high producing strain	16.264
DRR006523	Root Summer glycyrrhizin low producing strain	9.976
DRR006524	Root Summer glycyrrhizin low producing strain	10.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.415
SRR2868004	Drought Stress (root)	12.047
SRR2967015	Control (root)	11.656

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.811
SRR9715740	Leaf	10.683
SRR9715741	Leaf	8.303
SRR9715739	Root	3.000
SRR9715742	Root	7.267
SRR9715743	Root	6.266

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.831
SRR8749028	MeJA induced 9h	36.954
SRR8749029	MeJA induced 9h	21.867
SRR8749030	Uninduced	13.915
SRR8749031	Uninduced	3.649
SRR8749032	Uninduced	4.726

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.182
SRR8400027	Control - Root	11.394