Gene detail information of Glyur000066s00006207 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28320.1 | 0 | Pleckstrin homology (PH) and lipid-binding START domains-containing protein |
| NR | XP_006592703.1 | 0 | PREDICTED: uncharacterized protein LOC100779206 [Glycine max] |
| Swissprot | tr|F4JSE7|EDR2_ARATH | 2.00E-59 | Protein ENHANCED DISEASE RESISTANCE 2 |
| trEMBL | tr|I1LTK2|I1LTK2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G29750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 48124 | 56487 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006207.1 | PF00169.24 | PH | 25 | 128 | 1.00E-05 |
| Glyur000066s00006207.1 | PF01852.14 | START | 202 | 339 | 5.80E-17 |
| Glyur000066s00006207.1 | PF07059.7 | DUF1336 | 522 | 727 | 2.10E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.296 |
| SRR1783600 | control | 8.306 |
| SRR1783602 | moderate drought stress | 6.525 |
| SRR1811619 | moderate drought stress | 6.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.429 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.028 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.964 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.328 |
| SRR2868004 | Drought Stress (root) | 23.909 |
| SRR2967015 | Control (root) | 21.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.125 |
| SRR9715740 | Leaf | 8.172 |
| SRR9715741 | Leaf | 8.165 |
| SRR9715739 | Root | 3.632 |
| SRR9715742 | Root | 13.001 |
| SRR9715743 | Root | 12.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.939 |
| SRR8749028 | MeJA induced 9h | 7.619 |
| SRR8749029 | MeJA induced 9h | 3.230 |
| SRR8749030 | Uninduced | 3.834 |
| SRR8749031 | Uninduced | 0.801 |
| SRR8749032 | Uninduced | 1.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.905 |
| SRR8400027 | Control - Root | 28.992 |