Gene detail

Gene detail information of Glyur000066s00006205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28315.1	2.00E-146	Nucleotide/sugar transporter family protein
NR	XP_003540188.1	0	PREDICTED: uncharacterized membrane protein At1g06890 [Glycine max]
Swissprot	tr\|Q8RXL8\|Y1689_ARATH	1.00E-141	Uncharacterized membrane protein At1g06890
trEMBL	tr\|K7LVI6\|K7LVI6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29790.3}

Sequence

Transcript Sequence

>Glyur000066s00006205.1
CTACCACGCACTAGTTCCAAGGTTCATCTCAACTTAATATATCATTTACTCCTCTTTATCAATATTAAATTAAATAATAAGAAAAAATGGGAGAGATGTCGGGCTTCCAATTGGGTGTTATTGGTGCATTGTTTCTCTCGGTGGCTTCTTCTGTCTCCATTGTCATATGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCCTTCGCCACAACACTTACTAGTTGGCATTTGATGGTCACATTTTGCACCCTTCATGCGGCTCAACGCCTAAATCTGTTCGTGGCCAAGTCCATTGACTTGAAGACGGTCATGCTTTTTGGCTTTCTAAATGGCATTTCCATTGGATTTCTCAACTTGAGCCTTGGCTTCAATTCTGTTGGATTCTACCAGATGACAAAACTTGCGATCATACCATTCACCGTATTGTTAGAAACTATTTTCCTAAATAAACAGTTCAGCCAGAAAATAAAATTCTCTTTATTCCTATTACTTGTTGGAGTTGGCATTGCCTCTATCACGGACCTTCAGCTCAATTTTGTGGGAACCGTCCTTTCCATTTTAGCAATCATAACTACATGTGTTGGTCAAATTCTGACCAACACAATACAGAAGAAGCTTAATGTCTCTTCCACACAGTTGCTCTACCAATCTGCTCCATTCCAAGCAGCAATTCTTTTTGTTTCAGGCCCTGTAGTGGATCAAATGCTCACCAAGCAAAATGCATTCATCATCCTGTCCTGCTTGATTGCCGTTTCTGTGAACTTCAGCACGTTTCTAGTTATAGGCAAAACATCCCCTGTAACTTATCAAGTGCTAGGCCACCTCAAAACTTGCCTTGTTCTAGGATTTGGCTACACATTACTCCATGACCCATTCACTGGAAGGAACATCATTGGAATACTGGTTGCCATTTTTGGGATGGGCTTGTACTCTTATTTCTGCATTGAGGAGAACAAAAAGAAACAGTTATTAAGCGATCTTCCATTGGCCTCTCAGGTTAAAGACAAAGATAACTCACCACTTTTGGCTGGGAAAAACATGGGTAATCAAGACGAGGAAAATCATGAGCCTAAGAAATTAAGCAAGGACTCTGTTATTTAAAAGAACAGGCTCTATGTCTTTTAATATTTCATATATTTTGGGTTCTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	37373	40029	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006205.1	PF03151.11	TPT	153	284	8.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.985
SRR1783600	control	5.123
SRR1783602	moderate drought stress	2.486
SRR1811619	moderate drought stress	2.613

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.919
DRR006520	Root Summer glycyrrhizin high producing strain	26.459
DRR006521	Root Winter glycyrrhizin high producing strain	3.203
DRR006522	Root Winter glycyrrhizin high producing strain	3.412
DRR006523	Root Summer glycyrrhizin low producing strain	15.992
DRR006524	Root Summer glycyrrhizin low producing strain	15.182
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.829

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.485
SRR2868004	Drought Stress (root)	24.420
SRR2967015	Control (root)	23.037

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.372
SRR9715740	Leaf	13.273
SRR9715741	Leaf	5.905
SRR9715739	Root	2.238
SRR9715742	Root	13.608
SRR9715743	Root	11.440

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.169
SRR8749028	MeJA induced 9h	20.010
SRR8749029	MeJA induced 9h	7.714
SRR8749030	Uninduced	7.399
SRR8749031	Uninduced	0.666
SRR8749032	Uninduced	2.003

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.706
SRR8400027	Control - Root	24.438