Gene detail

Gene detail information of Glyur000066s00006202

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28305.1	1.00E-94	Putative lysine decarboxylase family protein
NR	XP_004487095.1	5.06E-146	PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Cicer arietinum]
COG	YP_686619.1	2.00E-64	hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q8RUN2\|LOG1_ARATH	3.00E-130	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1
trEMBL	tr\|A0A072VC46\|A0A072VC46_MEDTR	3.00E-144	Lysine decarboxylase family protein {ECO:0000313\|EMBL:KEH39342.1}

Sequence

Transcript Sequence

>Glyur000066s00006202.1
ATCCAATTTGTCAAGCCGAACCGTGAGACACAAACACAAAGGCTACTTTCTTAACTTCACACAGTGTTGTGTGTGTGTGTGTGTGAGAGAGAGAGGAACATGGAGAGAGAAACAGAGATGAAGCAATCCAAGTTCAAGAGGATTTGTGTGTTCTGTGGCAGTAGCCCAGGGAACAAAACTAGTTATAAGGACGCTGCTATTGAGCTTGGAAGGGAATTGGTGTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGATTGATGGGGTTGATTTCTCAGGCTGTTTACAATGGAGGTCGCCATGTAATTGGAGTGATTCCCAGAACACTTATGCCAAGAGAGCTCACTGGAGAGACAGTGGGGGAAGTGAAGGCGGTAGCAGACATGCATNAAAGGAAAGCAGAGATGGCTAGGAATTCTGATGCCTTTATTGCCTTACCCGGTGGTTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGNTTGCTGAATGTTGATGGATACTACAATTCCTTTTTGTCTTTCATTGACAAAGCTGTGGAAGAAGGGTTCATCAGCCCCACCGCTCGCCATATAATTGTGTCAGCCCCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAATATTTCCCACAACATGAAAAAGTTGCCTCCAAGCTAAGCTGGGAAAGTGAACACAGCTAGATTAGTAGTAGTCCTCAAATTGTGAAATCTAGAGATGATTAGATGGTGATGGAAGTTTGTGGAGATGCCAATTGTTAGTGCATCAGAATCAGAATGTGATACAATTAAAGGAACTATTATCGTAGAATGAAGATCACAATTTCCTAGAGCCGGATTTTCTTTGTGCTCTTACATTTCCAATTGTTAGTGTAAACTGTAGATTTGGAATCTTGCTATGAAGGCTAACTACTGTGTTCAAATTTCAATGTGAGTTCTGTTTTTCTTTTGAGATTCAATCCGTTGATCAAAAAGAGAAAAATTGAGCAGAGCTTAGAGAATCAGTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00066	12318	17208	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000066s00006202.1	PF03641.9	Lysine_decarbox	57	187	6.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.899
SRR1783600	control	0.856
SRR1783602	moderate drought stress	0.726
SRR1811619	moderate drought stress	0.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.412
DRR006520	Root Summer glycyrrhizin high producing strain	0.409
DRR006521	Root Winter glycyrrhizin high producing strain	0.105
DRR006522	Root Winter glycyrrhizin high producing strain	0.012
DRR006523	Root Summer glycyrrhizin low producing strain	2.193
DRR006524	Root Summer glycyrrhizin low producing strain	2.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.016
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.346
SRR2868004	Drought Stress (root)	2.410
SRR2967015	Control (root)	1.350

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.223
SRR9715740	Leaf	78.215
SRR9715741	Leaf	70.974
SRR9715739	Root	0.047
SRR9715742	Root	0.671
SRR9715743	Root	1.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.185
SRR8749028	MeJA induced 9h	0.922
SRR8749029	MeJA induced 9h	0.569
SRR8749030	Uninduced	3.714
SRR8749031	Uninduced	5.161
SRR8749032	Uninduced	2.449

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.082
SRR8400027	Control - Root	3.071