Gene detail information of Glyur000065s00004331


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G59540.12.00E-32Ribosomal L38e protein family
NRXP_007159382.11.16E-41hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
Swissprottr|O22860|RL38_ARATH9.00E-4260S ribosomal protein L38
trEMBLtr|V7CR14|V7CR14_PHAVU4.00E-42Uncharacterized protein {ECO:0000313|EMBL:ESW31376.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00065415291416879+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004331.1PF01781.13Ribosomal_L38e2681.90E-32
Glyur000065s00004331.2PF01781.13Ribosomal_L38e3692.00E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control81.770
SRR1783600control81.992
SRR1783602moderate drought stress78.318
SRR1811619moderate drought stress77.605

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain177.606
DRR006520Root Summer glycyrrhizin high producing strain175.986
DRR006521Root Winter glycyrrhizin high producing strain75.758
DRR006522Root Winter glycyrrhizin high producing strain74.132
DRR006523Root Summer glycyrrhizin low producing strain167.829
DRR006524Root Summer glycyrrhizin low producing strain167.210
DRR006525Leaf Summer glycyrrhizin high producing strain33.441
DRR006526Leaf Summer glycyrrhizin high producing strain33.333

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)327.677
SRR2868004Drought Stress (root)205.226
SRR2967015Control (root)172.499

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf120.559
SRR9715740Leaf128.522
SRR9715741Leaf106.456
SRR9715739Root169.992
SRR9715742Root138.715
SRR9715743Root129.793

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h216.277
SRR8749028MeJA induced 9h46.768
SRR8749029MeJA induced 9h143.916
SRR8749030Uninduced23.914
SRR8749031Uninduced19.160
SRR8749032Uninduced38.785

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root311.139
SRR8400027Control - Root264.888

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved