Gene detail

Gene detail information of Glyur000065s00004324.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G43500.2	Plant regulator RWP-RK family protein
NR	XP_006592131.1	PREDICTED: protein NLP8-like [Glycine max]
Swissprot	tr\|O22864\|NLP8_ARATH	Protein NLP8
trEMBL	tr\|I1LQB5\|I1LQB5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05390.1}

Sequence

Transcript Sequence

>Glyur000065s00004324.1
ATGGAAGACCCCTTTTCCATTGGGGGAAATGGAATTGGCTATTGGACACCACTTGATGGTGGAATGAAAAACTCAGCTCCTGAGGATATGTTTAACAACATTTCTGAGCTCATGAACTTTGATACCTACGCTGGCTGGTGCAATGGCACATCTGTGACTGATCAGAGTTTGGCTAATGAGCTTTCATCATTTGCCTCAATACCATATTCACCACTTGATGGATTGAATTTAGTGGAACAAAGCAATGGTCCATTCTTTACAACAGAAGTAGTTAGTGGAAATTACAATGCTACTATGGAAAGCTCCCCCAGTTATGGGGAGAGAGTTGTATTACAGCAAATGGACACCCAACTTGGGTCCTCAGTTAATGCAAATGATACAAATAACTTAGACTCAAAACAAAAACAAAATGGCTCATTTCAGCAACTTAATACCTCAGACATGGGTAATAATTACATGATATCCAGGTCACCTGGTTGGTCACTTGATGAGAGAATGCTGAGAGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCTGTGAAGCATGGNGATGAATTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGACCAAAAGCTTGCAGGGTATCGCGAAGTGTCAAGGACGTTTACATATCCTGCACAAGTAAAGGCAGGATCTTTTCTGGGGCTTCCCGGTCGTGTGTTTGTCTCCCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACCATAAAACTGAGTACNCGAGATTGGAGCATGCAATCAATCACGAGGTTCGCGGATCAATCGCTCTTCCCATATNGGATCCGCAATCTGAAGTGCCATGTAGTGCTGTGCTGGAACTTGTCACTACAAATGAAAAGCCTAATTTTGACAGAGAACTAGAAATTGTTTCTCATGTGCTCCAGCATGTAAATTTAAGGACTATTATGCCTCCACGACTTCTTCCTCAGTGTCTATCAAATAACAAAAGAGCTGCTTTAAAAGAGATAATTGATGTGTTACGAGCCGTGTGTCATGCACATAGCTTGCCACTGGCACTTACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAGAAGAATCTGAGAGAATAAGAATTAAAGAGGGTCATACTAGTTGTAATGAGAAATGCGTACTATGTATTGAAGAATCAGCTTGCTACATAAATGATAAAGTGGTAGGAGGATTTGTCCATGCATGTTCTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGGCTTATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATACAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACATATACTAATGATGATGATTACATTTTAGAATTCTTTCTACCTGTCAATATGACAGGGAGTTCAGAACAACAACTTCTGTTAGACAATCTCTCAGGTACTATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAATTAATAGGGATAGAAGGCTCCCGAATTGGGTTTCAAAAGGAAAAAGTCCCAGGTTTTCTTCCAATGCCCGGGGGGAACTCTCAGATTGCATTAATAAGTCGTGACTATGATTTAGTCCAGAAGATGTCCTTGAATGCAACTAATCAGAAAAATAATGGAATTGAAACTGCTCATAGCCAGGCAATGAGTGGAACAAGAAAGCAAGTTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTTAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGCATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAAATAAAGACTGTGCTTGACTCTGTCCAAGGAGTGGAAGGAGTGCTGAAGTTTGACCCTTACACTGGGGGGTTTGTGGCAGGAGGATCACTCATCCAAGAAATTGGTGCACATAGGAGTCTTCTGTTATCTGAGAAAAGTAGTGTTGTTAAAGACCCTAAGCCTGTAACACAAGAAGCAGTCTTAGTACCTCCAGCACCCGGTAGCACAGGCGATAACTCGACCATTAAGTTGGAGAATGATGGTATGCTTATCTCTAATTCCTCTGAGGGTGATTTGAAGAAAGACAATGCTGCTTCTGTTGATTGTATTCAACATTCAAAAACAATAGCCATGGATGATGATGATGGATCATGCCAGATAGCCTGCCTTTGGACAAAGGCTAGGGATTGTCTTGAACAAACCTCTCTAGGATCTGTTCTTGAAAAGGAAGGGGATCAATGGGGTTTGAACAAGACCAGTTTTTTGGGAGCAGAAAACTCTATCCATGGTATTGCCCCTCATAGTTCAGTCTCCTTGATCGAGCTTGGTATGGATTGTGGCAATNGAGCTGATGAACATAACCACCCTACTTCTTCAAGCATGACAGACTCATCCAATGGTTCTGGCTCAATGATGCATGGCAGTTCATCAGTCTCTCAGAGCTTTGAGAACCAACAGAAGCACTCAAAAGTCAAATCACCTTGTGTTGACAGTGAGTCAAAAATTGTTGTCAAAGCCACCTATAGGGGAGATACCATTCGTTTCAAGTTTGATCCATCAGCAGGTTGTTTCCACCTATATGAAGAGGTTGCAACAAGGTTCAAGCTACAAAATGGGTCATTCCAGCTCAAATATCTTGATGATGAGGAGGAATGGGTTATGTTGGTGAATGACTCTGATTTGCAAGAATGTATAGAGATTTTGGGTGANATTGGCACACGTTGTGTGAAGTTTCTTGTTAAGGATGTACCTAGTGTTATAAGGAGCCGTGGCAGTAGTAACAGTTGCTTCTTTTTTATGTAG

Protein Sequence

>Glyur000065s00004324.1
MEDPFSIGGNGIGYWTPLDGGMKNSAPEDMFNNISELMNFDTYAGWCNGTSVTDQSLANELSSFASIPYSPLDGLNLVEQSNGPFFTTEVVSGNYNATMESSPSYGERVVLQQMDTQLGSSVNANDTNNLDSKQKQNGSFQQLNTSDMGNNYMISRSPGWSLDERMLRALSFFKESAGGGILAQVWVPVKHGDEFILSTSEQPYLLDQKLAGYREVSRTFTYPAQVKAGSFLGLPGRVFVSHVPEWTSNVGYYHKTEYXRLEHAINHEVRGSIALPIXDPQSEVPCSAVLELVTTNEKPNFDRELEIVSHVLQHVNLRTIMPPRLLPQCLSNNKRAALKEIIDVLRAVCHAHSLPLALTWIPCCYSEGIGEESERIRIKEGHTSCNEKCVLCIEESACYINDKVVGGFVHACSEHHLEEGQGIAGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMQRICKSLRTVSDAELIGIEGSRIGFQKEKVPGFLPMPGGNSQIALISRDYDLVQKMSLNATNQKNNGIETAHSQAMSGTRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIKTVLDSVQGVEGVLKFDPYTGGFVAGGSLIQEIGAHRSLLLSEKSSVVKDPKPVTQEAVLVPPAPGSTGDNSTIKLENDGMLISNSSEGDLKKDNAASVDCIQHSKTIAMDDDDGSCQIACLWTKARDCLEQTSLGSVLEKEGDQWGLNKTSFLGAENSIHGIAPHSSVSLIELGMDCGNXADEHNHPTSSSMTDSSNGSGSMMHGSSSVSQSFENQQKHSKVKSPCVDSESKIVVKATYRGDTIRFKFDPSAGCFHLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECIEILGXIGTRCVKFLVKDVPSVIRSRGSSNSCFFFM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	377514	382293	-

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK
EAR motif-containing Proteins	RWP-RK

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004324.1	PF02042.10	RWP-RK	594	644	1.30E-26
Glyur000065s00004324.1	PF00564.19	PB1	886	965	6.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.904
SRR1783600	control	0.952
SRR1783602	moderate drought stress	1.250
SRR1811619	moderate drought stress	1.232

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.699
DRR006520	Root Summer glycyrrhizin high producing strain	0.690
DRR006521	Root Winter glycyrrhizin high producing strain	0.631
DRR006522	Root Winter glycyrrhizin high producing strain	0.607
DRR006523	Root Summer glycyrrhizin low producing strain	0.859
DRR006524	Root Summer glycyrrhizin low producing strain	0.935
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.662

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.525
SRR2868004	Drought Stress (root)	4.077
SRR2967015	Control (root)	3.806

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.321
SRR9715740	Leaf	4.739
SRR9715741	Leaf	2.720
SRR9715739	Root	0.375
SRR9715742	Root	0.971
SRR9715743	Root	1.014

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.389
SRR8749028	MeJA induced 9h	0.227
SRR8749029	MeJA induced 9h	0.278
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.183
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.427
SRR8400027	Control - Root	7.716