Gene detail

Gene detail information of Glyur000065s00004319

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G06720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_006592128.1	PREDICTED: ribosome biogenesis protein BMS1 homolog isoform X1 [Glycine max]
trEMBL	tr\|I1LQB2\|I1LQB2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05360.1}

Sequence

Transcript Sequence

>Glyur000065s00004319.1
ACTTGACTCGCTTCCATGGCCGTCAACGACGCCGATCAATCCAATAAGGCTCACCGTACCCGTCAATCCGGCGCCAAATCCTACAAGAAGAGCAAAAATAAGAAGAAGCACGATGCCGGAGAGGACCAGAAAACGCAAAACCCTAAGGCGTTCGCATTTTCTTCCTCGAACAAAGCCAAGAGATTGCAGTCACGCGCCGTCGAGAAAGAGCAGCGCCGCCTTCACGTTCCCATCATCGACCGCTCTTACGGTGAGCCCCCTCCATACGTCGTCCTCGTGCAGGGTCCCCCTCAGGTTGGAAAGTCACTTTTGATTAAGTCTTTGATTAAGCACTACACAAAGCATAATCTGCCTGAAGTTCGAGGTCCAATTACTATCGTATCAGGAAAGCAAAGGCGGCTGCAGTTCGTCGAATGCCCGAGCGATATCAATGGCATGCTTGATGCAGCTAAGTTTGCTGATCTAGCACTTCTTCTTATAGATGGCAGTTATGGTTTTGAAATGGAAACCTTTGAATTTCTTAATATTTTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTTACTCATCTTGATAAATTCAAGGATGTTAAAAAGTTGAGGAAAACAAAACAACGACTCAAACACCGGTTTTGGACCGAAGTACATCAAGGAGCTAAGTTGTTTTACTTATCCGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCATATGTTTTGGTAGATCGTTTTGAAGATATCACCCCCCCTGAAAAAGTGCATGCAAATAATAAATGTGACCGAAAAGTCACACTTTACGGTTATCTTAGAGGTTGTAATTTGAAAAAGGGAAACAAGGTGCACATAGCTGGCGTTGGTGATTATAGTTTAGCTCATGTTACTAGTTTACCTGATCCTTGTCCTCTTCCATCTGCTGCCAAAAAGAAAGGACTTCGTGATAAGGAGAAGTTATTTTATGCTCCCATGTCTGGCGTTGGGGATCTTCTGTACGACAAAGATGCTGTGTACATAAATATTAATGATCACCTTGTTCAATTTTCAAAAGTTGATGATGAAAACTCTGCCATGACGAGCAAAGGAAAGGACAGAGATGTTGGGGAGGTTTTGGTGAAATCGCTTCAGAATACCAAATATTCGATCAATGAAAAGCTAGAGAATAGCTTTATCAATTTTTTTGGTCGAAAACCAAAAGTGTCATCAGAAGCTCTACCTGATGCACAGGGTACAGACAAGGATGTAGAGCAGGATGGAAAAATAGAGACTTTGGATAATAATGAAATGGATTTGGATGGTTCAGAATCATCTGATCAGGAGGAAGCTGNTGCCATGTCAGACAGTGAGGCCTATGGTTCTGATGATGATGGTGATGCAACAGGTAGTAAAGGTACAAATGGAGACCGCTTAAAAGAGCAGATTGAGTTTCACAATGGAAGACGAAGGAGAAGAGCAATATTTGGAAATGACGTTGATAAAAGTGATCTGATGGATTCAGAAGAAGAAGAAGAGGATGAGGAGGAGGAGGATGGTGTTGCCACTGATGATGGGGCATCTTCTGATTCAGAATCTTCAAAAGAGGAGAAAGATGACAACGATAATGATGACACAAATGAAGATGACCTGGGAAATGTTTCGAAGTGGAAAGAGTCTTTGGCAGAAAGAACTGTGTCACGGAAAAATCCTAGTCTGATGCAACTTGTGTATGGGGAATCTGAATCTACTATTAATTCAACCTCTACAAATGAAGAGAATGATAGTAGCGAGGATGATGAAGGCGAAGGGGACTTTTTTAAGCCTATAGAAGAAGTGAAAAAGCAAAATATGAGAGATGGATTGAATGATGGAACCGTCAACACCGATGATTGTTCCAAATATGCACAATTTATGGATCAGAGATGGGATAAGAAAGATAANGAGGAGATTCGCAACCGTTTTGTGACTGGAAATTTGGCAAAAACTGCACTCAGAAATGCACTACAAAAAGCTAATACAGAAGAGGAAAATGGTGATGTCTATGGTGACTTTGAAGATCTAGAAACAGGAGAAAGATATGAGAATTATCGGACAGATGATGCTTTTGCAACAACACACAAGGGAGATGATTTAGAAGCTGAGGAGCGGAGGCTTAAGAAACTCGCTCTTCAGGAAGATGCTGATAATGAAAATGAAGCCAGGTTCCATCGTGGTCAACCTAATGAAAGTAACTATTTTGACAAGTTGAAGGAAGAGATCGAGCTTCGGAAACAAATGAATATTGCTGAACTGAACGATCTTGATGAGGATACCAGAATAGAGATAGAAGGCTTCCGAACAGGGACATACCTAAGATTGGAGGTTCACAATGTTCCCTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTTTAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTACTGAAGACTAGAGACCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCTATTGAGGATCGCAATGGAAGGCATCGAATGCTAAAATACACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCACCTCCCAACACTGGAATAGTTGCTGTTCAGAATTTATCAAACAATCATGCAACATTTAGGATTACCACAACTGCAGTTGTACTTGAGTTNAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTACCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTGGCTCGGTTTGAGGGTGCGGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGTTAGGTAACCAACCAAAAAAGAAGGGTGGGCAAGCCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCGTGGACTCAAGTTGAAGTTCCTCAGTTCTACAATCCTTTGACAACGGCATTGCAGCCTCGTGACCAGACCTGGAAAGGAATGAGAACCGTTGCTGAATTGAGAAGAGAACACAATNTCCCCATACCTGTAAACAAAGATTCTTTTTACAAGAAAATCGAAAGGAAGCCTAGAAAGTTCAATCCTTTGGTGATTCCCAAGTCTATAGAGGCAAACCTTCCCTTTGCATCAAAACCAAAGGATATACCCAAGCGTAAAAGGCCATCGCTCGAAGAGAGAAGGCAAAAGGGCGTTGTCATGGAACCCCGCGAGCGCAAAATTCACGCTCTTGTTCAACACCTCCAGTTAATGAATAATGAAAAGGTTAAAAAGCGGAAGCTTAAGGAACAGAAGAAGAGGAAAGTGCTGGAAGAAGAGAGAGCAAAGGATGAACAGTTGTCGAAAAAGCGCCGGAGAGAGGAAAGGCGAGACAAATACCGGGCACAAGACAAGCTCAGTAAGAAAATTCGGAGAGCAGAGTAATAGGCCAATTATTATTAGTAGAGTAAATTGAATTGAAGTGGTTTTGTGTAACAGTCACGGATGCTTTGGTAGTTAGCTTCCTAGCGCATCCTGAATCAATTTTCAGAGTGGTTGACATTCCTTCAACTTTGCTTGTAAAAATATTTATTTATATTATGTTCCCAG

Protein Sequence

>Glyur000065s00004319.1
MAVNDADQSNKAHRTRQSGAKSYKKSKNKKKHDAGEDQKTQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHVPIIDRSYGEPPPYVVLVQGPPQVGKSLLIKSLIKHYTKHNLPEVRGPITIVSGKQRRLQFVECPSDINGMLDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEVHQGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLAHVTSLPDPCPLPSAAKKKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHLVQFSKVDDENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSFINFFGRKPKVSSEALPDAQGTDKDVEQDGKIETLDNNEMDLDGSESSDQEEAXAMSDSEAYGSDDDGDATGSKGTNGDRLKEQIEFHNGRRRRRAIFGNDVDKSDLMDSEEEEEDEEEEDGVATDDGASSDSESSKEEKDDNDNDDTNEDDLGNVSKWKESLAERTVSRKNPSLMQLVYGESESTINSTSTNEENDSSEDDEGEGDFFKPIEEVKKQNMRDGLNDGTVNTDDCSKYAQFMDQRWDKKDXEEIRNRFVTGNLAKTALRNALQKANTEEENGDVYGDFEDLETGERYENYRTDDAFATTHKGDDLEAEERRLKKLALQEDADNENEARFHRGQPNESNYFDKLKEEIELRKQMNIAELNDLDEDTRIEIEGFRTGTYLRLEVHNVPCEMVEYFDPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNNHATFRITTTAVVLEXNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEELGNQPKKKGGQAKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRREHNXPIPVNKDSFYKKIERKPRKFNPLVIPKSIEANLPFASKPKDIPKRKRPSLEERRQKGVVMEPRERKIHALVQHLQLMNNEKVKKRKLKEQKKRKVLEEERAKDEQLSKKRRREERRDKYRAQDKLSKKIRRAE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	359530	367992	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042254 ribosome biogenesis

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004319.1	PF00009.22	GTP_EFTU	124	223	0.00011
Glyur000065s00004319.1	PF08142.7	AARP2CN	232	318	4.40E-31
Glyur000065s00004319.1	PF04950.7	DUF663	718	1023	1.40E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.399
SRR1783600	control	34.381
SRR1783602	moderate drought stress	35.833
SRR1811619	moderate drought stress	35.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.491
DRR006520	Root Summer glycyrrhizin high producing strain	30.068
DRR006521	Root Winter glycyrrhizin high producing strain	20.347
DRR006522	Root Winter glycyrrhizin high producing strain	20.048
DRR006523	Root Summer glycyrrhizin low producing strain	34.679
DRR006524	Root Summer glycyrrhizin low producing strain	34.974
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.698
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.639

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.289
SRR2868004	Drought Stress (root)	29.544
SRR2967015	Control (root)	34.002

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.611
SRR9715740	Leaf	18.878
SRR9715741	Leaf	18.654
SRR9715739	Root	2.001
SRR9715742	Root	17.149
SRR9715743	Root	15.291

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.020
SRR8749028	MeJA induced 9h	60.323
SRR8749029	MeJA induced 9h	63.626
SRR8749030	Uninduced	15.679
SRR8749031	Uninduced	19.897
SRR8749032	Uninduced	17.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.090
SRR8400027	Control - Root	29.562