Gene detail information of Glyur000065s00004317 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43560.1 | 7.00E-79 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| NR | AFK38395.1 | 2.37E-137 | unknown [Medicago truncatula] |
| COG | NP_681893.1 | 5.00E-25 | FKBP-type peptidylprolyl isomerase [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|O22870|FK163_ARATH | 2.00E-98 | Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic (Precursor) |
| trEMBL | tr|G7JEW8|G7JEW8_MEDTR | 9.00E-138 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 354233 | 358287 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004317.1 | PF00254.23 | FKBP_C | 125 | 215 | 7.00E-18 |
| Glyur000065s00004317.2 | PF00254.23 | FKBP_C | 135 | 225 | 7.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.333 |
| SRR1783600 | control | 2.278 |
| SRR1783602 | moderate drought stress | 1.948 |
| SRR1811619 | moderate drought stress | 1.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.572 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.438 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.536 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.765 |
| SRR2868004 | Drought Stress (root) | 1.908 |
| SRR2967015 | Control (root) | 1.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.858 |
| SRR9715740 | Leaf | 54.986 |
| SRR9715741 | Leaf | 34.431 |
| SRR9715739 | Root | 0.305 |
| SRR9715742 | Root | 1.726 |
| SRR9715743 | Root | 1.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.513 |
| SRR8749028 | MeJA induced 9h | 0.340 |
| SRR8749029 | MeJA induced 9h | 0.402 |
| SRR8749030 | Uninduced | 0.487 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.168 |
| SRR8400027 | Control - Root | 2.417 |