Gene detail information of Glyur000065s00004314.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54420.17.00E-78homolog of carrot EP3-3 chitinase
NRXP_003597548.10Endochitinase PR4 [Medicago truncatula]
COGYP_001544943.14.00E-36chitinase [Herpetosiphon aurantiacus DSM 785]
Swissprottr|P27054|CHI4_PHAVU4.00E-112Endochitinase PR4 (Precursor)
trEMBLtr|C6T7J9|C6T7J9_SOYBN2.00E-131Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05310.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00065326687330319+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM18,GH19


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01183E3.2.1.14EC:3.2.1.14Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity

GO:0008061  chitin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004314.1PF00182.14Glyco_hydro_19362121.40E-63
Glyur000065s00004314.1PF00187.14Chitin_bind_12612931.30E-07
Glyur000065s00004314.1PF00182.14Glyco_hydro_193183581.30E-08
Glyur000065s00004314.1PF00182.14Glyco_hydro_193594932.30E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.884
SRR1783600control25.752
SRR1783602moderate drought stress4.193
SRR1811619moderate drought stress4.183

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain92.346
DRR006520Root Summer glycyrrhizin high producing strain91.825
DRR006521Root Winter glycyrrhizin high producing strain0.065
DRR006522Root Winter glycyrrhizin high producing strain0.062
DRR006523Root Summer glycyrrhizin low producing strain169.552
DRR006524Root Summer glycyrrhizin low producing strain170.893
DRR006525Leaf Summer glycyrrhizin high producing strain16.958
DRR006526Leaf Summer glycyrrhizin high producing strain16.554

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)49.316
SRR2868004Drought Stress (root)53.342
SRR2967015Control (root)37.845

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf376.104
SRR9715740Leaf448.311
SRR9715741Leaf394.193
SRR9715739Root120.054
SRR9715742Root109.777
SRR9715743Root116.829

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.591
SRR8749028MeJA induced 9h6.246
SRR8749029MeJA induced 9h12.383
SRR8749030Uninduced6.074
SRR8749031Uninduced4.750
SRR8749032Uninduced3.338

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root28.441
SRR8400027Control - Root27.090

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved