Gene detail information of Glyur000065s00004313 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004507364.1 | 0 | PREDICTED: arginine decarboxylase-like [Cicer arietinum] |
| COG | YP_007131452.1 | 1.00E-153 | arginine decarboxylase [Stanieria cyanosphaera PCC 7437] |
| trEMBL | tr|I1LQA4|I1LQA4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 321150 | 324457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004313.1 | PF01276.15 | OKR_DC_1 | 85 | 387 | 3.10E-65 |
| Glyur000065s00004313.1 | PF03711.10 | OKR_DC_1_C | 502 | 549 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.899 |
| SRR1783600 | control | 2.870 |
| SRR1783602 | moderate drought stress | 4.508 |
| SRR1811619 | moderate drought stress | 4.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.622 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.555 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.575 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.521 |
| SRR2868004 | Drought Stress (root) | 3.889 |
| SRR2967015 | Control (root) | 3.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.048 |
| SRR9715740 | Leaf | 12.030 |
| SRR9715741 | Leaf | 5.299 |
| SRR9715739 | Root | 2.336 |
| SRR9715742 | Root | 2.061 |
| SRR9715743 | Root | 2.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.692 |
| SRR8749028 | MeJA induced 9h | 7.188 |
| SRR8749029 | MeJA induced 9h | 6.378 |
| SRR8749030 | Uninduced | 2.383 |
| SRR8749031 | Uninduced | 1.796 |
| SRR8749032 | Uninduced | 2.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.324 |
| SRR8400027 | Control - Root | 5.015 |