Gene detail information of Glyur000065s00004308.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 4.00E-88 | AP2/B3-like transcriptional factor family protein |
| NR | XP_004507369.1 | 0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 3.00E-122 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|V7AEE9|V7AEE9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03899.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 304338 | 308107 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004308.1 | PF02362.16 | B3 | 7 | 94 | 2.80E-10 |
| Glyur000065s00004308.1 | PF02362.16 | B3 | 296 | 387 | 2.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.485 |
| SRR1783600 | control | 19.142 |
| SRR1783602 | moderate drought stress | 23.985 |
| SRR1811619 | moderate drought stress | 24.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.919 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.500 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.802 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.222 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.087 |
| SRR2868004 | Drought Stress (root) | 51.637 |
| SRR2967015 | Control (root) | 57.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.251 |
| SRR9715740 | Leaf | 20.181 |
| SRR9715741 | Leaf | 22.294 |
| SRR9715739 | Root | 11.442 |
| SRR9715742 | Root | 23.690 |
| SRR9715743 | Root | 20.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.080 |
| SRR8749028 | MeJA induced 9h | 28.058 |
| SRR8749029 | MeJA induced 9h | 34.082 |
| SRR8749030 | Uninduced | 12.082 |
| SRR8749031 | Uninduced | 11.970 |
| SRR8749032 | Uninduced | 11.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.349 |
| SRR8400027 | Control - Root | 41.758 |