Gene detail information of Glyur000065s00004307 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35490.1 | 2.00E-57 | mitochondrial ribosomal protein L11 |
| NR | XP_003551888.2 | 4.45E-97 | PREDICTED: 54S ribosomal protein L19, mitochondrial-like [Glycine max] |
| COG | YP_001413990.1 | 1.00E-39 | 50S ribosomal protein L11 [Parvibaculum lavamentivorans DS-1] |
| Swissprot | tr|O78412|RK11_GUITH | 5.00E-31 | 50S ribosomal protein L11, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00736} |
| trEMBL | tr|K7MPB0|K7MPB0_SOYBN | 9.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 301819 | 302268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004307.1 | PF03946.9 | Ribosomal_L11_N | 11 | 69 | 5.30E-25 |
| Glyur000065s00004307.1 | PF00298.14 | Ribosomal_L11 | 74 | 144 | 1.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.016 |
| SRR1783600 | control | 31.954 |
| SRR1783602 | moderate drought stress | 43.822 |
| SRR1811619 | moderate drought stress | 43.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.702 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.659 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.867 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 80.299 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.654 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.328 |
| SRR2868004 | Drought Stress (root) | 44.422 |
| SRR2967015 | Control (root) | 44.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.417 |
| SRR9715740 | Leaf | 32.329 |
| SRR9715741 | Leaf | 23.080 |
| SRR9715739 | Root | 93.337 |
| SRR9715742 | Root | 52.234 |
| SRR9715743 | Root | 56.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 119.043 |
| SRR8749028 | MeJA induced 9h | 54.319 |
| SRR8749029 | MeJA induced 9h | 80.685 |
| SRR8749030 | Uninduced | 18.763 |
| SRR8749031 | Uninduced | 8.428 |
| SRR8749032 | Uninduced | 22.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 88.073 |
| SRR8400027 | Control - Root | 81.741 |