Gene detail

Gene detail information of Glyur000065s00004306.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18990.1	2.00E-75	AP2/B3-like transcriptional factor family protein
NR	XP_004507369.1	0	PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	2.00E-108	B3 domain-containing transcription factor VRN1
trEMBL	tr\|V7AF48\|V7AF48_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW03900.1}

Sequence

Transcript Sequence

>Glyur000065s00004306.1
ATGGGGCGAGCTTTCCCATTCGTTACCCTCTCAGTTCCTGATGGCAGTGTCTGGCGTGTAGGATTAAAAAGAACAGAGAACAAATTTTGGTTCCTTGATGATTGGCAAGAATTTGCTCAACGCTATTCCATTGGTCCTGGATACTTGTTGCTATTCAGATATGAAGGAAAGTCATCTTTCAATGTTAATATTTATAATTTGGCTACGACTGAGATAAACTATCAATCAGCCACACGAAGTGGTAATGAAGGGCCTTATTTTGCAAATCGTCTTAAAATTTTTGAAGAATTGGAAGATGAAGATTCCATTGAGGACTTGGCTTCATCACCTTCACGTGGCACATTGCAGAACAAAGCCTTTTCTGGATCACAAGATAAATTAACACCTGGCAAGTGTTATTCGCCTTCAGCATTGCAGAATCTGTTCAATGGGTCCAAACTTAATAGCGTAAACTGGGGAGATGATGGGAATGCCCTTTCTTCAAGAAGTGCCAACTCACTAGACAATCAGTTTACCAGAGACATAGGAGTCCAGTTTAATGCAGCTGAGTTTAAAAGGTCTAACGAAGAAGTGAAGTTGCGTGCATCTATTGCTGAAAAGAATAAAAAAACTGCGATGAAGAAGCGGAAATCAGGTCTTAATGGACAGGAACCTTCTTCTGAACATGAAGATGAGGTAGAAATGCGCGTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAGAAGGCCATGGAGGCAGCAAAAGCATTTGAACCGCCTAATCCTTTCTGCCGGGTTGTCCTGCGGCCCTCCTATCTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAACATTTGAATGGGGTTTCAGGATTCATTAAACTTCAAATCTCCGATGGGAGACAGTTTCCGGTTCGCTGCCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTTGCATTAGAGAACAATCTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAACGAAGGATGTAGTTCTGCAAGTTACTATATTTCGCGTTACTGAGGATGAGGATGTGGGACTGTTGAGCCCCCCTTTGCAGCAGAACCAACATGTGAGCTCAGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	300006	301325	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004306.1	PF02362.16	B3	268	359	1.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.749
SRR1783600	control	5.923
SRR1783602	moderate drought stress	8.723
SRR1811619	moderate drought stress	7.376

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.327
DRR006520	Root Summer glycyrrhizin high producing strain	9.766
DRR006521	Root Winter glycyrrhizin high producing strain	10.665
DRR006522	Root Winter glycyrrhizin high producing strain	10.130
DRR006523	Root Summer glycyrrhizin low producing strain	14.591
DRR006524	Root Summer glycyrrhizin low producing strain	14.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.802
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.674

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.195
SRR2868004	Drought Stress (root)	11.491
SRR2967015	Control (root)	12.293

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.031
SRR9715740	Leaf	4.671
SRR9715741	Leaf	7.667
SRR9715739	Root	2.967
SRR9715742	Root	5.819
SRR9715743	Root	6.222

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.002
SRR8749028	MeJA induced 9h	5.733
SRR8749029	MeJA induced 9h	8.232
SRR8749030	Uninduced	2.919
SRR8749031	Uninduced	2.551
SRR8749032	Uninduced	4.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.913
SRR8400027	Control - Root	10.218