Gene detail

Gene detail information of Glyur000065s00004292

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42650.1	8.00E-67	allene oxide synthase
NR	AFG26687.1	2.52E-136	cytochrome P450 CYP74C, partial [Glycine max]
COG	YP_002501570.1	7.00E-12	heme peroxidase [Methylobacterium nodulans ORS 2060]
Swissprot	tr\|Q9AVQ1\|DES_SOLTU	1.00E-88	9-divinyl ether synthase
trEMBL	tr\|H9TVI9\|H9TVI9_SOYBN	9.00E-137	Cytochrome P450 CYP74C {ECO:0000313\|EMBL:AFG26687.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000065s00004292.1
AGTAAGAGAGCTAATATTTCTATAGGTCCTCATTGTGTAAGAGAACACATGGTGGTAAAAAAAAACATATTTCTAAGTATTATTTATGAATGATGGCCTTTAAAATCTCAAACAATCAGGTCCCTTATTATTCGCTTACTCCACAAAAGCTGGCAAGCAAGTTCATCACTACCGTCTCAGCAAACAGTACGTAACAGTAGCAACAACAACACACAGGAACTACAGAAAAATGGCCTCTTCAGACAACAACAACAACAACAAGAAGGAGCATCAGCTTCCCCTGAAGCCAATCCCGGGAAGCTACGGCCTCCCCTTCTTCGGACCCATAAGCGACAGACACGACTACTTCTACAACCAGGGACGCGACAAGTACTTCGCCACCCGAATCGAAAAGTACAACTCCACCGTCATAAAGACAAATATGCCCCCGGGTCCTTTCATCTCCTCAAACCCAAAAGTCATCGCTCTCCTCGACGGTGTCTCCTTCCCAATCCTCTTCGACAACTCCAAGGTCGAAAAGCGTGACGTCCTCGACGGCACTTTCATGCCTTCCACCTCCTACACCGGTGGCTACCGTACCTGTGCCTTCCAAGACACCACCGAACCCTCCCACAACATCCTCAAAAGCTTCTTCCTCCACTTACTCTCCTCCAAACACGATTCCTTTGTCCCTCTCTTCCGCAACGCACTCTCCGGCCATTTCACCGCCATGGAAGACGAGCTCGCCGGGAAGTCCGGCAAGGCCAGCTTCAACACCTCCGTCGGCGACGCCACCTTTACTTTCCTCTTCCGACTCTTAACCGGCAAGGACCCCACCGAGACTAAGATCGGAACCGATGGGCCCACGCTCGTGCAGACGTGGCTTGCTGCACAGCTGGCACCTCTTGCTACCCTTGGGGGTCCGAAGATATTCAGCTACCTCGAGGATTTTCTGATCAGAACGATCCCGTTCCCGCGTGGACCGTGAAGTCGAGCTACAAGAAGCTCTACGAGGGGTTGTCGACGGCGGGAACGGCGACGTTGGATGAGGCGGAGAAGATGGGGATCAAGAGGGATGAGGCGTGCCACAACTTGGTGTTCATGCTGGGGTTCAACGCTCAGGGTGGGTTGACGAACCAGTTACCGATCCTGATCAAGTGGGTCGGGTTAGCAGGTGAGGGTTTGCACAGGCAGCTTGCGGATGAGATCAGGACCATTGTCAAGGATGAAGGCGGGGTTACTCTGCGCGCGTTGGATAAGATGACATTGACCAAGTCAACGGTCTACGAAGCCCTAAGGATAGAGCCAGCAGTGCCGTACCAGTACGCGAAGGCGAGGGAGAATCTAGTGGTGCAGAGCCACGATGCATCCTTTGAGATCAAGAAGGGCGAGATGATCTTCGGATACCAACCGTTCGCTACAAAGGATCCTAAGATCTTCGAGAATNCCGAGGACTTCGTACCCCACAGGTTCGTTGGGAGTGATGGGGAGAAGCTGTTGAGACACGTGTTCTGGTCTAACGGTCGCGAGACGGATGAGCCCACACCTGATAATAAGCAGTGTCCCGCCAAGAATCTGGTGGTGCTCTTGTGCAGGCTTTACTTGGTGGAATTCTTCTTGCGCTATGATACCTTCACATTCGAGTTTAAACCCGTCGTTTTGGGACCCAACGTCACCATCAAGTCCCTCACTAAGGCCTCCACCTTCTGACATGTTAATTATTGTGATCAAATAAAGTAAATATTTGTTTGTTTGTTTGTTTGTTTTTAGTAAAGTTGTACTCTGGGGTGGGAAAGTGCACTAAAGATGGTTTGGACTTTGTGCTTTGTGTATGTGGTGTGTACATTATTTACTGCAGAGTGATATATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	195769	199184	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP74A

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01723	AOS	EC:4.2.1.92	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004292.1	PF00067.17	p450	44	143	7.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	168.510
SRR1783600	control	168.815
SRR1783602	moderate drought stress	310.376
SRR1811619	moderate drought stress	308.178

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	258.829
DRR006520	Root Summer glycyrrhizin high producing strain	255.508
DRR006521	Root Winter glycyrrhizin high producing strain	550.299
DRR006522	Root Winter glycyrrhizin high producing strain	536.719
DRR006523	Root Summer glycyrrhizin low producing strain	116.261
DRR006524	Root Summer glycyrrhizin low producing strain	116.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	183.779
SRR2868004	Drought Stress (root)	207.653
SRR2967015	Control (root)	350.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.751
SRR9715740	Leaf	5.603
SRR9715741	Leaf	10.575
SRR9715739	Root	225.958
SRR9715742	Root	217.962
SRR9715743	Root	218.977

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.000
SRR8749028	MeJA induced 9h	14.271
SRR8749029	MeJA induced 9h	21.571
SRR8749030	Uninduced	3.479
SRR8749031	Uninduced	6.780
SRR8749032	Uninduced	12.854

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	138.092
SRR8400027	Control - Root	139.720