Gene detail

Gene detail information of Glyur000065s00004291

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50830.1	4.00E-65	cold-regulated 413-plasma membrane 2
NR	XP_006591816.1	2.26E-115	PREDICTED: cold-regulated protein isoform X1 [Glycine max]
Swissprot	tr\|Q9SVL6\|CRPM2_ARATH	2.00E-85	Cold-regulated 413 plasma membrane protein 2
trEMBL	tr\|C6SWQ8\|C6SWQ8_SOYBN	8.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05150.1}

Sequence

Transcript Sequence

>Glyur000065s00004291.1
CAAATCTTTTTAAAGACACAACGATTGCTTGAAATTCGTTTAACTGCTTCAGAGCCAATCAAATCAGAGTGCATAGTACTCATCGATCGCGTGCTCGCTCCTGTTTNGATACTGTCGTTTTTTTCTTACTCCTTTCTGACTTCTGGGTTGGGAACGAAGAAAATGTTGAAAAGGATGGATTTTCAAGAAGAAGCAGTTCAGTTGATCAACTCAGATTTCAGGGACCTGAGTCTAGCTGCNAATAAACTCGCCAAACATGCCATCAAACTCGGTGGCGTAGGCTTTGGATTGGGAGTCTCTATTTTCGGATCGATTGCTTCCATTGCTGCCATTTATTTGTTGGTTTTGGATCGTACAAACTGGAGGACAAACATTCTTACATCACTTCTCATTCCATACATTTTCTTCAGCTTGCCTTCACTAATTTTCGGCATCTTCAGGGGAGAGATTGGAAAATGGATTGCTTTGGTTGCTGTTGTTTTACGGCTTTTCCTTCCAAAACATTTCCCTGATTGGCTTGAAATGCCTGGTGCCTTGATTCTTCTCATGGTTGTAGCTCCTGGTCTACTTGCAGACACATTCAGAAACGACATTGTGGGGGTGGTAGTGTGCCTTATCATTGCATGTTATTTGCTACAGGAACACATTCGTGCATCTGGTGGTTTCAGAAACTCCTTCACTAAAGCCAATGGCATTTCAAATTCCGTTGGCATAGTAATTCTGTTAGTCTACCCCGTTTGGGCGTTGGTGGTCATGCTTTTTTAGGCACCAGAGTTTGTATATGATTGATATGTGTGATTTAAACCAATTTGTCTTCTGTATCTTTCATTTGTTGGAAGTTTGATGCCTAGAAATTACCCTGTCATTGCTTGCTTGATGTTTTATCACTTTTGTACTTTCGTTTTCATGTGTAAAAAAATATCAAGTCAATTCTCATTGAGAGACTTTTTGGCTTCATTGAATGTTGAAAATAAAAATGATGAAGAGGATTGACATAGTATCTTCCTAGCTAGCTTCTTGTGTATTCACAAATCATAGATGATTTGAGGAGATCATTGTATTCTTACCTGTGGGATATAACATAATTTACATCTGCTGCTGTGCATTATACAGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	178632	181656	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004291.1	PF05562.6	WCOR413	62	241	2.90E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.093
SRR1783600	control	2.102
SRR1783602	moderate drought stress	3.876
SRR1811619	moderate drought stress	3.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.440
DRR006520	Root Summer glycyrrhizin high producing strain	11.156
DRR006521	Root Winter glycyrrhizin high producing strain	1241.132
DRR006522	Root Winter glycyrrhizin high producing strain	1206.874
DRR006523	Root Summer glycyrrhizin low producing strain	10.863
DRR006524	Root Summer glycyrrhizin low producing strain	10.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.798
SRR2868004	Drought Stress (root)	115.505
SRR2967015	Control (root)	148.876

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.709
SRR9715740	Leaf	54.068
SRR9715741	Leaf	66.205
SRR9715739	Root	9.689
SRR9715742	Root	8.710
SRR9715743	Root	9.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.150
SRR8749028	MeJA induced 9h	21.550
SRR8749029	MeJA induced 9h	9.686
SRR8749030	Uninduced	8.454
SRR8749031	Uninduced	10.422
SRR8749032	Uninduced	10.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.524
SRR8400027	Control - Root	21.510