Gene detail

Gene detail information of Glyur000065s00004290.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49430.1	0	long-chain acyl-CoA synthetase 2
NR	XP_004507386.1	0	PREDICTED: long chain acyl-CoA synthetase 2-like isoform X2 [Cicer arietinum]
COG	YP_006526432.1	2.00E-80	Long-chain acyl-CoA synthetase [Melioribacter roseus P3M-2]
Swissprot	tr\|Q9XIA9\|LACS2_ARATH	0	Long chain acyl-CoA synthetase 2
trEMBL	tr\|A0A072UX04\|A0A072UX04_MEDTR	0	Long-chain fatty acyl CoA ligase {ECO:0000313\|EMBL:KEH30360.1}

Sequence

Transcript Sequence

>Glyur000065s00004290.1
ATTTAGAGAACAAAAAAAAAACACCAAAACATAAAACACCCCCATTTGTTAATCACATCCTCTGTGAAATCCATCACACAATGCAAGATGTATACACTGTGAAGGTGGAGGAAGCAAGGCCTGCAACTCATGAAAAGCCTTCAGCAGGTCCAGTGTACAGGTGCATTTATGCCAAAGATGGCTTATTGGAGTTACCTTCTCATTTTGAATCTCCATGGGACTTCTTCAGGGACTCCGCGAAGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCGAAAAACTGATTCAAAGGTGGGTCCTTATGAATGGCTCACATATCAGGAGGCTTATGATGCTGCCATCCGAATGGGTTCCGCCATGAGGAGCCGTGGTGTCAATCCTGGAGACCGTTGTGGCATATATGGATCCAACTGTCCTGAATGGATAATATCAATGGAGGCTTGTAATAGCTATGCAGTAACATATGTCCCATTATATGACACCCTCGGTCCTAATGCCGTGGAGTTTATCATAAACCATGCTGAAGTGTCCATAGCTTTTGTACAGGAAAGCAAGATTCCTTCTATTTTGTCATGTCTTGATCGGTGTTCAAATCTTAAAACTATTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAACATGGTGCATCCTGCTTCTCATGGGGAGAGTTTCTCCAGTTGGGAAATCTGGATTTGGATCTACCACTAAAAAAGAAGACTAGCATCTGCACAATCATGTACACTAGTGGAACAACAGGCGAACCCAAAGGTGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCCATTGACCAAATAATTTTTTTAACAGACAAAGCGGGAGCCGAAGACGATGTGTATTTCTCTTTTCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATATACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATATCAGATTCTTAATGGAAGATATTCAGGCACTGAAACCAACTATATTTTGTGGCGTTCCTCGAGTTTTTGACCGTGTTTATACTGGTATCAATAGCAAAATTTCATCTGAAGGATCACTGCAGAAGACATTGTTTCAGTGGGCATATAACTACAAGTTAGGATATCTAAAGAAGGGTCTTCCACAAGACAAAGCAGCACCTCTATTTGATAGGCTTGTGTTTGACAAGATAAAACAAGCATTAGGTGGAAGAGTTCGTATGCTGTTATCTGGAGCTGCTCCTTTGTCCAGTCATGTGGAAGAGTTTTTGAGGGTCACTTTTGGATCTACTTTGGCACAAGGATATGGTCTTACTGAAAGTTGTGGTGGGTGTTTAACTGCTATAGTCAATGTGTTTTCTATGATGGGAACGGTTGGAGTCCCTATGCCAACCATTGAGGCCAGGCTTGAGTCTGTGCCAGAGATGGGATATGATGCACTTTCCAGTCAAGCCTGTGGAGAAATTTGCCTGAGAGGGAATACCTTGTTCTCCGGTTACCACAAGCGTCAAGATCTTACTGAAGAGGTCCTTATTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCTGCCAGATGGAGCCATGAAAATCATTGATAGAAAAAAGAATATCTTCAAATTGTCTCAAGGAGAATATGTTGCAGTAGAGAATATTGAAGACAAGTATTTGCGGTGCCCTCTTATAACATCAATTTGGGTTTATGGAAACAGTTTTGAGTCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAAACAGGCCCTTGAGGATTGGGCACTTAGAGGTTTTGAGATGCTAAAAGCAGTTCATCTGGAACCAATTCCCTTTGACATGGAGAGAGATCTAATAACTCCAACATTCAAACTGAAGAGACCACAATTACTCAAGCACTATAAGGATTATATTGATCAACTATACAAGGAAGCGAAGGGAACAATGGTGTGAGGCAGGTGGTGGACGGGAACGCTATGTGGCAATTATACTGATTAGTGATTTCTGGCAGTTTTCAGAATCCATTTAATTTTTTTGGTTCATTATGTATTGAGTGAAGTGAAAAAGCTATAAGCAAAACATGTATATTGAAATAATAATTGCATATGCACATTCAGCCATTCTTAGAAAGATTACAAAATGATATTCCGTGGACCTGGCAACATCTGTTTTTACTCCTTTGTTTTTGTGAAGTTATTTTGGCCCTGACCAACTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	170584	177966	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01897	ACSL, fadD	EC:6.2.1.3	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Fatty acid degradation	map00071
			Peroxisome	map04146
			Quorum sensing	map02024
			Adipocytokine signaling pathway	map04920
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004290.1	PF00501.23	AMP-binding	51	521	6.30E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.851
SRR1783600	control	2.718
SRR1783602	moderate drought stress	3.378
SRR1811619	moderate drought stress	3.465

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.525
DRR006520	Root Summer glycyrrhizin high producing strain	3.155
DRR006521	Root Winter glycyrrhizin high producing strain	2.017
DRR006522	Root Winter glycyrrhizin high producing strain	2.009
DRR006523	Root Summer glycyrrhizin low producing strain	1.661
DRR006524	Root Summer glycyrrhizin low producing strain	1.623
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.707
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.756
SRR2868004	Drought Stress (root)	3.644
SRR2967015	Control (root)	2.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.313
SRR9715740	Leaf	11.589
SRR9715741	Leaf	21.995
SRR9715739	Root	0.585
SRR9715742	Root	2.112
SRR9715743	Root	2.428

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.096
SRR8749028	MeJA induced 9h	4.532
SRR8749029	MeJA induced 9h	4.027
SRR8749030	Uninduced	2.510
SRR8749031	Uninduced	1.716
SRR8749032	Uninduced	2.436

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.952
SRR8400027	Control - Root	13.274