Gene detail information of Glyur000065s00004283 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49405.1 | 5.00E-29 | Uncharacterised protein family (UPF0497) |
| NR | XP_004507388.1 | 2.51E-92 | PREDICTED: CASP-like protein Os03g0767900-like [Cicer arietinum] |
| Swissprot | tr|Q10EJ2|CSPLU_ORYSJ | 9.00E-54 | CASP-like protein 5C1 |
| trEMBL | tr|I1LJI7|I1LJI7_SOYBN | 1.00E-91 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 145533 | 147535 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004283.1 | PF04535.7 | DUF588 | 34 | 161 | 4.20E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.462 |
| SRR1783600 | control | 1.444 |
| SRR1783602 | moderate drought stress | 3.376 |
| SRR1811619 | moderate drought stress | 3.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.482 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.265 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.741 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.432 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.948 |
| SRR2868004 | Drought Stress (root) | 3.138 |
| SRR2967015 | Control (root) | 2.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.346 |
| SRR9715740 | Leaf | 3.569 |
| SRR9715741 | Leaf | 3.658 |
| SRR9715739 | Root | 0.494 |
| SRR9715742 | Root | 1.598 |
| SRR9715743 | Root | 1.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.430 |
| SRR8749031 | Uninduced | 0.172 |
| SRR8749032 | Uninduced | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.324 |
| SRR8400027 | Control - Root | 5.012 |