Gene detail

Gene detail information of Glyur000065s00004282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G15980.1	2.00E-57	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007131879.1	9.88E-166	hypothetical protein PHAVU_011G049000g [Phaseolus vulgaris]
Swissprot	tr\|Q9XIM8\|PP155_ARATH	1.00E-67	Pentatricopeptide repeat-containing protein At2g15980
trEMBL	tr\|V7AGA2\|V7AGA2_PHAVU	4.00E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESW03873.1}

Sequence

Transcript Sequence

>Glyur000065s00004282.1
ATGGCGATTCAATTCCAGCTAGTTAAGCGCGTTGACCAACCTCCAAAACTCAAACCCCTGTCCCTCTTATTTTCCTCTAGTTCCGACCAAAGTGTGGTAGCAAGCGTGGTTTCCATCCTCACCAATCAACGTTCCAAATCCCGTTGGAGCTATCTCCGCTCAGCGTGCCCCAACGGCATCGACCCCGTCGAGTTCTCCGAAATCACCCTCCACCTCAAGAACAAACCCCACCTCGCTCTTCGCTTCTTCCAATGGACCCAATCCAAATCCCTCTGTCACCACAACCTCGCCTCCTACTNCACCATCATCCACACCCTCGCACGTGCCCGCCTCAAGTCACACGCTTACGACGCCATCCGAACCGCCCTTCGCACTCCCCAGCTCCACCAAAACGACGACGGAGACCCTTGTCNTTTCGAGTCTCCACCTCTGAACCTCTTCGAGACCCTCGTCACCACTTACCGAGATTGTGACTCTGCCCCGTTCGTGTTTGATTTGCTAATCGAAGCTTGTTTAGAGTCCCAAAAACTCGACCCTTCGATTGAAATCGTCAGAATGTTACTCTCTCGCGGGATCAGCCCCAAAGTTTGCACTTTGAATTCTTTGATTTCTAGGGTTTCCCGAAGTCGCGGGGTGGATGCAGGGTATGCAATTTACCGGGAGTTATTTCGGTTAGATGAGGAAAAAAGTGAAATTTCGAAGAGGGGTTTAGGTTTTAGAGTCACCCCCAATGGGTATTGTAATGTTGCGGATGTTGATTCTGCTGTTTTTGTGTATAAGGATATGTCTAGGAGGTCTTTCATTCCTGATGCTTCAACCCTTGACATGATGGTTAGGTTACTTTGTGATAAGGGTAGGGTTCAGGAAGCTATGGAGTTTTTCAGGTGTGGGGTTGGTAAATTTGATTTACTTCCCAAGGAAAAGAGTTATGAGGCCTTGATAAAGGGGTTATGTCTTGAGGGGAGGATGGAAGAGGCGTTGAAGCTTCAGGCAGAGATGGTAGGAAAAGGGTTTCAGCTGAATTCAGAAATATATGGCGCTTTTATTGATGGGTACATTAGACAAGGGAACGAGGAATTGGCAGGAGCTTTGAGGAAAGAAATGCTGCAAACTCAGATGCAGAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	143063	144532	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004282.1	PF01535.15	PPR	276	295	0.21
Glyur000065s00004282.1	PF12854.2	PPR_1	307	333	8.40E-06
Glyur000065s00004282.1	PF01535.15	PPR	344	369	0.18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.055
SRR1783600	control	7.732
SRR1783602	moderate drought stress	10.181
SRR1811619	moderate drought stress	9.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.953
DRR006520	Root Summer glycyrrhizin high producing strain	8.227
DRR006521	Root Winter glycyrrhizin high producing strain	6.903
DRR006522	Root Winter glycyrrhizin high producing strain	6.978
DRR006523	Root Summer glycyrrhizin low producing strain	7.443
DRR006524	Root Summer glycyrrhizin low producing strain	7.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.412
SRR2868004	Drought Stress (root)	7.860
SRR2967015	Control (root)	8.104

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.460
SRR9715740	Leaf	12.724
SRR9715741	Leaf	15.348
SRR9715739	Root	17.250
SRR9715742	Root	19.411
SRR9715743	Root	18.592

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.345
SRR8749028	MeJA induced 9h	5.856
SRR8749029	MeJA induced 9h	5.646
SRR8749030	Uninduced	4.653
SRR8749031	Uninduced	5.800
SRR8749032	Uninduced	4.352

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.959
SRR8400027	Control - Root	9.744