Gene detail

Gene detail information of Glyur000065s00004277

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16060.1	5.00E-54	hemoglobin 1
NR	KEH30379.1	8.48E-127	Non-symbiotic hemoglobin [Medicago truncatula]
COG	YP_007072004.1	2.00E-11	globin [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q9FVL0\|HBL1_MEDSA	2.00E-82	Non-symbiotic hemoglobin 1
trEMBL	tr\|A0A072UKY8\|A0A072UKY8_MEDTR	3.00E-127	Non-symbiotic hemoglobin {ECO:0000313\|EMBL:KEH30379.1}

Sequence

Transcript Sequence

>Glyur000065s00004277.1
ATGAACACCATCGTGAAGGGCATGGAAGAGAACAAGTTAGCTGCACCAGCAGTAGTAGTGGAACAGAGCAAGAACACCACCGTGCAGGAGGGCATATTGGAAGATCAGAAGCCAGCATTAGCGGTGGAAGAGAACAAGAACACCACCACTACTGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTCAAGTCATGGAACGCAATGAAGAAGGATTCTGCAGAGCTGAGTCTCAAGTTTTTCGCTAAAATACTGGAGATTGCTCCACCAGCGAAGCAAATGTTCTCATTCTTGAGAGATTCAAATACCTGTGAATCAGCAATTCAACTGCGGAAGGCTGGTAAAGTCACCGTGAGAGAATCAAACCTGAAGAAGTTAGGTGCCACCCATTTCAAAAGCGGTGTAAAAGACGAGCATTTTGAGGAGGGCATATTGGAAGAGAACAAGTTATCAGCACCAGCAGCAGTGGAAGAGAACATTAAGAACACCGTAGAGGGCATATTGGAAGATCAGAAGCCAGCATTAGCGGTGGAAGAGAACAAGAACANCACCACTACTGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTCAAGTCATGGAACGCAATGAAGAAGGATTCTGCAGAGCTGAGTCTCAAGTTTTTCGCTAAAATACTGGAGATTGCTCCACCAGCGAAGCAAATGTTCTCATTCTTGAGAGATTCAAATACTTGTGAATCAGCAGTTCAACTGCGGAAGGCTGGTAAAGTCACCGTGAGAGAATCAAACTTGAAGAAGTTAGGTGCCACCCATTTCAAAAGCGGTGTAAAAGACGAGCACTTTGAGGTGACAAAGCAGGCGCTTTTGGAGACCATAAAAGAAGCATTACCTGAAATCACGCTACAGAGAGAGAACATGAACGGCCTGGAGAGCAGAGGTTTCACGGCAGAGCAAGAAGCCTTAGTGGTGAAGTCATGGANTGCAATGAAGAAGAACTCTGCAGAGCTGAGTCTCAAGTTTTTCTTGAAAATATTTGAGATTGCTCCATCAGCTCAGAAATTGTTCTCATTCTTGAGAGATTCAAAAACCTGTGAATCAGCAGTTCAACTACGGAAGGCTGGTAAAGTCACCGTGAGAGAATCAAACTTGAAGAAGTTAGGTGCTACCCATTTTAAATACGGTGTAGTAGACGAGCACTTTGAGGTAACAAAGTTTGCACTTTTGGAGACCATAAAAGAAGCAGTACCTGAAATGTGGTCACCGGCCATGAAGAATGCATGGGGAGAAGCTTATGATCAGCTGGTCAATGCCATCAAATCTGAAATGAAACCTTCCTCTTAGACTTTCTTCCACTTTACGTAGTTCCTTTCTTCCCAAGTTGAATAAGATTGATATNAAGCCACCCAGATCCCCTGTTTGAGAATAAAGTATGAGTGTTTGGGCCTGTGTTTTTCTTTTGTATGAATATAATAATAATAATATACTTTATGTTGCTATTTGTGGGGTTGCTAGGATCGGAAAGTGTTTGTATTTAACAATTCTGTAATTGAAGATGATCGTATAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	114927	125560	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015671 oxygen transport

molecular_function

GO:0005506 iron ion binding

GO:0019825 oxygen binding

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004277.1	PF00042.17	Globin	57	105	1.30E-05
Glyur000065s00004277.1	PF00042.17	Globin	191	237	1.50E-05
Glyur000065s00004277.1	PF00042.17	Globin	310	357	1.10E-06
Glyur000065s00004277.2	PF00042.17	Globin	57	105	8.30E-06
Glyur000065s00004277.2	PF00042.17	Globin	191	237	9.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.110
SRR1783600	control	0.177
SRR1783602	moderate drought stress	1.020
SRR1811619	moderate drought stress	0.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.697
DRR006520	Root Summer glycyrrhizin high producing strain	3.498
DRR006521	Root Winter glycyrrhizin high producing strain	660.298
DRR006522	Root Winter glycyrrhizin high producing strain	644.039
DRR006523	Root Summer glycyrrhizin low producing strain	110.223
DRR006524	Root Summer glycyrrhizin low producing strain	111.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.956
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.823
SRR2868004	Drought Stress (root)	37.261
SRR2967015	Control (root)	25.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.962
SRR9715740	Leaf	0.745
SRR9715741	Leaf	3.167
SRR9715739	Root	3.358
SRR9715742	Root	5.251
SRR9715743	Root	5.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	579.656
SRR8749028	MeJA induced 9h	627.134
SRR8749029	MeJA induced 9h	885.156
SRR8749030	Uninduced	1966.899
SRR8749031	Uninduced	2927.131
SRR8749032	Uninduced	1936.413

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.026
SRR8400027	Control - Root	18.513