Gene detail information of Glyur000065s00004273 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66600.3 | 9.00E-106 | Protein of unknown function, DUF547 |
| NR | XP_006592117.1 | 0 | PREDICTED: uncharacterized protein LOC100789011 isoform X2 [Glycine max] |
| trEMBL | tr|K7LT13|K7LT13_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05060.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 93772 | 97899 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004273.1 | PF14389.1 | Lzipper-MIP1 | 74 | 156 | 1.50E-23 |
| Glyur000065s00004273.1 | PF04784.9 | DUF547 | 431 | 600 | 5.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.679 |
| SRR1783600 | control | 5.657 |
| SRR1783602 | moderate drought stress | 5.285 |
| SRR1811619 | moderate drought stress | 5.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.747 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.641 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.472 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.622 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.388 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.491 |
| SRR2868004 | Drought Stress (root) | 13.385 |
| SRR2967015 | Control (root) | 14.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.255 |
| SRR9715740 | Leaf | 0.118 |
| SRR9715741 | Leaf | 0.178 |
| SRR9715739 | Root | 0.894 |
| SRR9715742 | Root | 1.712 |
| SRR9715743 | Root | 1.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.178 |
| SRR8749028 | MeJA induced 9h | 0.140 |
| SRR8749029 | MeJA induced 9h | 0.500 |
| SRR8749030 | Uninduced | 0.174 |
| SRR8749031 | Uninduced | 0.506 |
| SRR8749032 | Uninduced | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.226 |
| SRR8400027 | Control - Root | 22.570 |