Gene detail information of Glyur000065s00004266 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18890.1 | 3.00E-106 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003541088.1 | 0 | PREDICTED: protein TIC 62, chloroplastic-like isoform X1 [Glycine max] |
| COG | YP_007113681.1 | 2.00E-32 | NAD-dependent epimerase/dehydratase [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q8SKU2|TIC62_PEA | 0 | Protein TIC 62, chloroplastic (Precursor) |
| trEMBL | tr|I1LQ66|I1LQ66_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 54948 | 61288 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004266.1 | PF13460.1 | NAD_binding_10 | 95 | 242 | 7.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.140 |
| SRR1783600 | control | 3.227 |
| SRR1783602 | moderate drought stress | 3.473 |
| SRR1811619 | moderate drought stress | 3.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.044 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.117 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.075 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.027 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 67.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.219 |
| SRR2868004 | Drought Stress (root) | 15.523 |
| SRR2967015 | Control (root) | 4.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.538 |
| SRR9715740 | Leaf | 48.825 |
| SRR9715741 | Leaf | 36.492 |
| SRR9715739 | Root | 1.091 |
| SRR9715742 | Root | 1.000 |
| SRR9715743 | Root | 0.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.927 |
| SRR8749028 | MeJA induced 9h | 2.164 |
| SRR8749029 | MeJA induced 9h | 5.890 |
| SRR8749030 | Uninduced | 5.084 |
| SRR8749031 | Uninduced | 22.630 |
| SRR8749032 | Uninduced | 3.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.054 |
| SRR8400027 | Control - Root | 4.894 |