Gene detail

Gene detail information of Glyur000065s00004264

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G34350.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
NR	XP_004507401.1	PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cicer arietinum]
COG	YP_007092789.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q94B35\|ISPH_ARATH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (Precursor)
trEMBL	tr\|A0A075EAU0\|A0A075EAU0_ASTME	(E)-4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313\|EMBL:AID51433.1}

Sequence

Transcript Sequence

>Glyur000065s00004264.1
CTGCCAAAACCGTTCTCACTCACCTAACCAGAAAAAATTTAGAGAGAAAAAAAGAAGCAGCTAATATGTAAAAATATAAAAACAATTCTAATAAGTAGTAACCGCATTTAATTATTAAAAGACAAAGAAGCTTATAAAATTTACCAAATCATCATTTCCTTATTTATATTCAATTCACACAAACCATAAAAAATAAAAGACGGAACACGAGTTTTTTGCAGCCATAAAACAGTGTATTGTTGTTGTTGTTGTTGTGTGTTGTGTTGTTGTTGACAGGCTCTGACCGTTTCTTCTTCAATCCAATGGCTTTCTGCGCGCACCTTTGCCGTCTGCCGGCGACTCGCATCGACGTCCCTTTGCCTGAGAGAATCCGGTGCCGGAAAGTGTTCTCCGTCCGTTGTTCGTCGGGTCCCGATTTCGACCCGAAGGTGTTCCGTAAGAACCTCACCAGGAGTGAGAATTATAACCGCAAAGGCTTTGGTCGCAAGGAGGAGACCCTCCAGCTCATGAATCGCGAGTACACCAGTGACATCATTAAGACTTTGAAGGAAAATGGATTTGAGTATACATGGGGTAATGTCACTGTGATGCTGGCTGAAGCCTATGGATTCTGTTGGGGAGTCGAGAGGGCTGTTCAAATTGCTTATGAGGCGAGAAAACAGTTTCCCAATGAGAAAATATGGCTTACCAATGAAATCATCCACAACCCAACTGTCAATAAGCGGCTAGAGGAGATGGCGGTGCAGAATATTCCCATGGAGGAAGGAAAGAAACAATTTGAAGTTGTCAACAAGGGCGATGTAGTCATATTGCCTGCTTTTGGAGCAGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGCCCATGGGTTTCAAAGGTATGGAATGTTGTTGAAAAGCACAAAAAAGGAGATTATACCTCAATTATTCATGGTAAATATACCCATGAGGAAACTGTAGCAACTGCATCTTTTGCTGCAAAGTATATTATTGTGAAGAATATGGCAGAGGCTGAATATGTCTGTGACTATATTCTTGGTGGTGAACTTAATGGATCCAGTTCAACCAAAGATGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAAGGACCTGATAAAAGCAGGCATTGCAAATCAGACAACTATGCTCAAGGGAGAGACTGAAGAGATTGGGAAACTAGTGGAGAGGACCATGATGCGCAAATTTGGTGTGGAAAACATCAATGAGCACTTCATAAGCTTCAACACAATTTGTGATGCAACTCAGGAGCGGCAAGATGCTATTTACAAGCTGGTGGAGAAAGAAATGGATCTTATGTTAGTAGTTGGTGGATGGAACTCGAGCAATACATCACACCTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTACTGGATTGACACTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCATGGCGAGCTTGTGGAGAAAGAAAACTGGCTGCCACAGGGTCCAATAAAAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTCGTGGAAGAAGTGCTTATCAAGGTGTTTGACTTGAAAAGAGAAGAAGCATTACAACTCGTGTAAAGTAGGTCTTCATACATAAATAATCAATGCATAAATGACCAGGAGGGTCTTTGATTTAAATTACAGGATCTGTTTGTTCACTTGTAGAATTTATCAATGACAAAAGCTCAATGTTAAAAGAGTTGTTCCAACTGTTGCCTGTTGCTGTAGCAATGTAGCATAAGCATATATCAGTGTTTGGTATTAGTTGTCATCATAGACCAACCTATTGGCATGTGATGTGAAAGCCGCCTATGCATTTGTAAATTTTGGCCTTGTCATTTGAATGGTAATGGTAATGGGAATAGCTCAATACAATAAAAAAAAAAAATAAAGGGATGTGATCTTTATGCAGTTGCAACTGCAAACTGTACATACATTATTATGGAGGTATCAAATACCGAAGATACTTTTCAGTTACCTAAATGCGGCAAAAATAACACAAGACCATAAGAGCTTTGGTATTTGGCCCTACTAAAAAATAAATAAAAAATACAGGAAATATACATGTAAATGAACTCAGTATATCTAAATAATGTCTTATGAGATGAGCTGCAGAAATTTTCAATTTGTATTTGTATGTCAAAAATACTCTATCATTGCTATATATAATCCATATAAGTTGCTATCATCCAATTGAAGAGTCTTCTTTTTCCCACCTTGATGTCTCAAAAAAAGCTATAAACTAACCAACAACACTATCAGCTTGCTTAGATAGAGATGATTCAACTATTTCAGGGACCTTATCAAGCAAGCGGTTCATCTCCTCCGGAAACTCCATCTTTGCTCTGTTAGTCTTCCCTCCAATAACAACTGTTGTTCCATCTTGTAAGGCCCATACCTTTCAATTGACCAAGAAGTTAATGAACATTTTCCTAGTGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	47207	51468	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03527	ispH, lytB	EC:1.17.7.4	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway

GO:0050992 dimethylallyl diphosphate biosynthetic process

molecular_function

GO:0046872 metal ion binding

GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004264.1	PF02401.13	LYTB	95	436	1.50E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.498
SRR1783600	control	36.013
SRR1783602	moderate drought stress	37.789
SRR1811619	moderate drought stress	37.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.102
DRR006520	Root Summer glycyrrhizin high producing strain	34.852
DRR006521	Root Winter glycyrrhizin high producing strain	38.171
DRR006522	Root Winter glycyrrhizin high producing strain	37.344
DRR006523	Root Summer glycyrrhizin low producing strain	46.317
DRR006524	Root Summer glycyrrhizin low producing strain	47.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	171.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	171.404

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	162.137
SRR2868004	Drought Stress (root)	297.899
SRR2967015	Control (root)	199.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	433.773
SRR9715740	Leaf	598.352
SRR9715741	Leaf	477.649
SRR9715739	Root	9.651
SRR9715742	Root	44.776
SRR9715743	Root	37.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.239
SRR8749028	MeJA induced 9h	135.191
SRR8749029	MeJA induced 9h	111.953
SRR8749030	Uninduced	344.476
SRR8749031	Uninduced	718.014
SRR8749032	Uninduced	378.708

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	174.153
SRR8400027	Control - Root	130.377