Gene detail information of Glyur000065s00004263 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49380.1 | 0 | cytochrome c biogenesis protein family |
| NR | XP_003537900.1 | 0 | PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like isoform X1 [Glycine max] |
| COG | YP_007142322.1 | 4.00E-110 | Cytochrome c biogenesis protein ccs1 [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q9XIA4|CCS1_ARATH | 0 | Cytochrome c biogenesis protein CCS1, chloroplastic (Precursor) |
| trEMBL | tr|I1LJH0|I1LJH0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 43600 | 47407 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004263.1 | PF05140.9 | ResB | 133 | 531 | 1.00E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.220 |
| SRR1783600 | control | 1.168 |
| SRR1783602 | moderate drought stress | 1.126 |
| SRR1811619 | moderate drought stress | 1.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.301 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.844 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.798 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.220 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.033 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.548 |
| SRR2868004 | Drought Stress (root) | 1.111 |
| SRR2967015 | Control (root) | 1.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.049 |
| SRR9715740 | Leaf | 17.485 |
| SRR9715741 | Leaf | 6.728 |
| SRR9715739 | Root | 0.490 |
| SRR9715742 | Root | 0.592 |
| SRR9715743 | Root | 0.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.915 |
| SRR8749028 | MeJA induced 9h | 2.077 |
| SRR8749029 | MeJA induced 9h | 1.541 |
| SRR8749030 | Uninduced | 0.894 |
| SRR8749031 | Uninduced | 0.494 |
| SRR8749032 | Uninduced | 1.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.367 |
| SRR8400027 | Control - Root | 2.656 |