Gene detail

Gene detail information of Glyur000065s00004261

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18850.4	2.00E-132	lysophosphatidyl acyltransferase 5
NR	XP_004507406.1	0	PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5-like isoform X1 [Cicer arietinum]
COG	YP_004465496.1	1.00E-11	putative acyltransferase [Alteromonas sp. SN2]
Swissprot	tr\|Q9LHN4\|LPAT5_ARATH	1.00E-172	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
trEMBL	tr\|A0A072UMZ9\|A0A072UMZ9_MEDTR	0	Phospholipid/glycerol acyltransferase family protein {ECO:0000313\|EMBL:KEH30403.1}

Sequence

Transcript Sequence

>Glyur000065s00004261.1
AAAAGAAGGTGGCAAGCTTCGTAGTTTTACACATTTTGCAGCCTTTTTTTGTTACCAAACTTTGCGAGCTATTTTACACTCTAGTTGTTCAGCTTGAAACAGTGGTGGAGGGTACTACTATTATTGTTGCAGAGTATCCACCACCAGAATCTACACCTTACTTCTAACTCCTAATCTAATCTCACTGTTCAACAAAACGAAGCTTGTCTCTTTTTCCTTACAAGCCCAATTTCCAAGTTCCCACCGACTCTTTTGTGTTGTGTTTCGTTGATCTCAATGTCTATCTGGGGTGGAGAAAATGCTTGAAGAAAAGGGTAAAGATATGGTACCGTCTACTTTCTCCTAGGCGTGTTCCTTTTGTAGCCAAGATTGTCAGAAATATGCTCTTATTAGGTCATCTAAAAGGACAAAACTGCCGGCAGAGTCCACCAGTTTTTGGTCTGCATCAGTAGAAGAAACTCAAAGGCCAGAGCAATTTTTTATACAAGATATTCTGTTTTGCCAATCCAGGCTTGTTAATATCTTCTATGTCAATTCATTGAGGGGGTAAATCTTGAAGAGGCAGTGCAGTTATTTCATTTCTGTGATTGTTTTTGATACATATGGCGGTTCTAAGTTCAAGTTTTGGATCAAAGTATCGTGATCTAGGTCCATTGAGAGTTCTAAGGGGTTTGGTGTGTCTACTGGTGCTGGTTTCGACAGCATTTGTAATATTAGTGTTCTTTGGCTTTATTGGTGCTGTTATCGTGCGACTTTTTAGCATCAGTTACAGCAGGAAAGCTACTTCCTTTTTCTTTGGTGCTTGGCTAACTTTGTGGCCCTTTCTATTTGAGAAAATNAACAAGACTAAAGTCGTGTTCTCTGGAGCTATTGTCCCTCCAAGAGAACGGATCTTACTGATCGCGAATCACAGAACTGAAGTGGACTGGATGTATTTATGGGACCTCGCATTGCGGAAGGAATGCATTGGATACATAAAATATGTACTTAAGAGCAGCTTGATGAGACTTCCAATTTTTGGTTGGGCATTTCACATACTGGAGTTCATCCCGGTGGAAAGGAAGTGGGAGGCTGATGAGTCAAACATGCGCCACATGCTTTCTACATTCAAGGATCCCCAAGATCCTCTCTGGCTTGCTATTTTCCCTGAAGGCACCGATTTCACTGAGCAGAAGTGCCTTCGGAGTCAAAAATATGCTGCTGAACACNGGTTACCAATTCTGAAAAATGTTTTACTGCCAAAGACCAAGGGCTTCTNCACCTGCTTGCAAGAGTTGAGGGACTCTCTAACTGCAGTTTATGATGTGACCATCGGTTACAAATACCGGTGCCCGTCTTTCTTGGACAATGTCTTTGGGGTGGAACCTTCCGAAGTTCATATCCATATCTGCCGCTTTCCCATTGATTGCATCCCGGTATCTGAAGACGAAATTTCCACGTGGTTGATGGATAGATTCCGANTAAAGGACCAGTTGCTTTCCAATTTCCAATTCCAAGGTCAGTTTCCTGATCAAGCCACAGAAAGGGACCTCCCTGCTGTGAAGAGCATTTTAAATGGCATTACAGTTATTTTGCTGACTGGCACATGCATGTACTACATTTTTTCCTCTGTCTGGTTTAAACTCTACGTGTCTTTAGTCTGCGCTTATTTGGCACCAGCCACATATTTCCATATTCGACNGCAACCCATTCTTGGCTTTTCGAAGATTTGTAATATTAGCATTGGACTTGCTATCTCATTTAAACAGTTGGCCCATAGAATGGTGGAGAACCAAGTTTTGGCATTGCTTTTCTCTAGGGGCACATATGACATTTGTGTATCTATATTGATGGAAACCTCAGTTACCATTGTGCTTTCTAGTTTCAGAACTTGGGAGTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00065	23395	27251	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13513	LCLAT1, AGPAT8	EC:2.3.1.- 2.3.1.51	Glycerolipid metabolism	map00561
			Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000065s00004261.1	PF01553.16	Acyltransferase	91	240	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.107
SRR1783600	control	8.200
SRR1783602	moderate drought stress	5.861
SRR1811619	moderate drought stress	5.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.173
DRR006520	Root Summer glycyrrhizin high producing strain	8.609
DRR006521	Root Winter glycyrrhizin high producing strain	2.538
DRR006522	Root Winter glycyrrhizin high producing strain	2.399
DRR006523	Root Summer glycyrrhizin low producing strain	7.044
DRR006524	Root Summer glycyrrhizin low producing strain	6.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.115
SRR2868004	Drought Stress (root)	3.044
SRR2967015	Control (root)	3.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.405
SRR9715740	Leaf	1.127
SRR9715741	Leaf	1.246
SRR9715739	Root	3.014
SRR9715742	Root	6.147
SRR9715743	Root	5.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.848
SRR8749028	MeJA induced 9h	0.534
SRR8749029	MeJA induced 9h	0.852
SRR8749030	Uninduced	0.093
SRR8749031	Uninduced	0.111
SRR8749032	Uninduced	0.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.244
SRR8400027	Control - Root	12.385