Gene detail information of Glyur000065s00004258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48490.1 | 6.00E-13 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK43895.1 | 2.46E-44 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8W453|DIRL1_ARATH | 9.00E-16 | Putative lipid-transfer protein DIR1 (Precursor) |
| trEMBL | tr|I3SUF3|I3SUF3_MEDTR | 9.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:AFK43895.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 11410 | 11718 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004258.1 | PF14368.1 | LTP_2 | 17 | 102 | 1.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.969 |
| SRR1783600 | control | 78.136 |
| SRR1783602 | moderate drought stress | 36.834 |
| SRR1811619 | moderate drought stress | 38.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 296.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 274.629 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 781.552 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 787.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.320 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 532.244 |
| SRR2868004 | Drought Stress (root) | 368.873 |
| SRR2967015 | Control (root) | 333.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.511 |
| SRR9715740 | Leaf | 2.703 |
| SRR9715741 | Leaf | 1.309 |
| SRR9715739 | Root | 377.745 |
| SRR9715742 | Root | 296.996 |
| SRR9715743 | Root | 285.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.973 |
| SRR8749028 | MeJA induced 9h | 0.330 |
| SRR8749029 | MeJA induced 9h | 0.479 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1228.413 |
| SRR8400027 | Control - Root | 1413.320 |