Gene detail

Gene detail information of Glyur000064s00005667

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22790.1	8.00E-139	MATE efflux family protein
NR	XP_007158419.1	0	hypothetical protein PHAVU_002G151500g [Phaseolus vulgaris]
COG	YP_004178020.1	4.00E-24	MATE efflux family protein [Isosphaera pallida ATCC 43644]
Swissprot	tr\|Q9SIA5\|DTX1_ARATH	2.00E-66	MATE efflux family protein DTX1
trEMBL	tr\|V7CM19\|V7CM19_PHAVU	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000064s00005667.1
ATGCTGCAATCAGAGCTAAGAGTTCAAGCAGGAATAGCCCTTCCAATGGTGGCCATGAACTTGGCTTGGTTTGCCAAGACAGCCATCACCACTGCATTTTTGGGACGCCTTGGGGAGCTCAGCTTAGCCGGCGGCGCGCTCGGGTTCACTTTTGCTAATGTCACTGGCTTCTCTGTCTTGAATGGTCTATGCGGTGCCATGGAACCCATTTGTGGACAGGCTCATGGTGCTAAAAACGCAAGGCTCCTTCACAAGACCCTTCTCATGACAATCTCATTGTTGCTATTGGTAACACTTCCCATTACTTTCATGTGGCTTCATATTGACAAAATTTTGATTCATTTTGGCCAACAAGAAGACATCTCCACTGTGGCCAGAACCTTTGTTTTCTATCTCGTACCCGACTTGTTTGTGTCATCACTCTTCTGTCCCCTAAAGGCCTACTTGAGCTCTCAAAGCATAACTCTTCCTACCATGTTTAGTTCTGGTNTAGCACTTGCTTTCCACATACCCCTTAACATACTGCTCTCAAGGACCATGGGGCTAAGAGGGGTTTCCATGGCGGTTTGGATAACTGATCTTNTTGTTGTGGTTCTGCTGGCCATCTATGTTTTAATCCTGGAGAGTAGAAAGGGAAGCATGTGGAAGGAAGGAGGGTGGTTGGATCAGAGCATTGTAGATTGGATTAGGCTGCTCAAGCTTTGTGGATCATGCTGCCTCAATACATGCCTGGAGTGGTGGTGCTATGAGATTCTAGTCCTGCTCACTGGCCACCTGGCAAATGCCAAGCAAGCAGTGGGAGTTTTGGCCGTTGTGCTAAACTTCGACTATTTGCTCTTTTCAGTGATGCTGTCGCTGGCCACGTGTGTTTCNACCCGTGTCTCCAACGAGCTTGGAGCAAACCAAGCCGGCCATGCTCGCCGATCAGCGTGTGTGTCTCTGGCAATGGGCTTTATCTCAGGTTTCATGGGCAGCTTGGCGATGGTGGCTGCCAGGGGAACTTGGGGGCCTCTGTTCAGCCATGATAGAGGAACTATAAGTGGAGTAAAGAAGACAATGCTGATGATGGCTTTGGTGGAAGTGTTTAATTTCCCATTAGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCTCGACCCTGGTTGGGTATGTATGCCAATCTNGGTGGGTTTTATTTCCTGGCTCTGCCCCTTGGTGTTGTTTTTGCCTTCAAGCTACGTCTCGGGCTTGTTGGACTCTTCATTGGACTTCTTACTGGTATTGTTGTCTGCTTGTCGATATTATTGGTATTTGTTGCGAGGATAAACTGGGTGGAAGAAGCCGCCAAGGCACAAACACTGACCAGCAACGAGCAAGTTAAAGAAGTTCCAGAATATGACNCCGAAGAACAAATTGAGGCTTGCGAAAATCATAAAGTGTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	422130	423551	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005667.1	PF01554.13	MatE	15	175	5.30E-25
Glyur000064s00005667.1	PF01554.13	MatE	239	400	1.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.002
SRR1783600	control	5.402
SRR1783602	moderate drought stress	3.126
SRR1811619	moderate drought stress	2.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.600
DRR006520	Root Summer glycyrrhizin high producing strain	4.461
DRR006521	Root Winter glycyrrhizin high producing strain	0.863
DRR006522	Root Winter glycyrrhizin high producing strain	0.612
DRR006523	Root Summer glycyrrhizin low producing strain	3.027
DRR006524	Root Summer glycyrrhizin low producing strain	2.720
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.387
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.764
SRR2868004	Drought Stress (root)	10.849
SRR2967015	Control (root)	13.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.713
SRR9715740	Leaf	1.504
SRR9715741	Leaf	1.643
SRR9715739	Root	2.059
SRR9715742	Root	3.143
SRR9715743	Root	2.358

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.394
SRR8749028	MeJA induced 9h	2.143
SRR8749029	MeJA induced 9h	1.794
SRR8749030	Uninduced	0.711
SRR8749031	Uninduced	1.728
SRR8749032	Uninduced	1.924

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.158
SRR8400027	Control - Root	1.653